Chlorine in PDB 6dcj: Lpoa N-Terminal Domain From Haemophilus Influenzae; Monoclinic Form at 1.35 A Resolution

The structure of Lpoa N-Terminal Domain From Haemophilus Influenzae; Monoclinic Form at 1.35 A Resolution, PDB code: 6dcj was solved by J.Vijayalakshmi, M.A.Saper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.44 / 1.35
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	68.988, 36.927, 95.359, 90.00, 108.08, 90.00
R / Rfree (%)	15.5 / 19

The binding sites of Chlorine atom in the Lpoa N-Terminal Domain From Haemophilus Influenzae; Monoclinic Form at 1.35 A Resolution (pdb code 6dcj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Lpoa N-Terminal Domain From Haemophilus Influenzae; Monoclinic Form at 1.35 A Resolution, PDB code: 6dcj:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Lpoa N-Terminal Domain From Haemophilus Influenzae; Monoclinic Form at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lpoa N-Terminal Domain From Haemophilus Influenzae; Monoclinic Form at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:23.6 occ:1.00 HH12 A:ARG170 2.5 25.6 1.0 HH22 A:ARG170 2.6 26.2 1.0 HH11 A:ARG75 2.6 24.2 1.0 HD3 A:ARG75 2.9 24.1 1.0 O A:HOH557 3.3 16.5 1.0 NH1 A:ARG170 3.3 21.3 1.0 HG12 A:VAL72 3.3 21.2 1.0 NH2 A:ARG170 3.4 21.9 1.0 NH1 A:ARG75 3.4 20.1 1.0 O A:HOH451 3.4 31.4 0.4 HB2 A:ARG75 3.6 24.5 1.0 HD2 A:ARG71 3.6 18.2 1.0 HG2 A:ARG71 3.6 17.9 1.0 HH12 A:ARG75 3.7 24.2 1.0 O A:HOH451 3.8 31.4 0.6 CZ A:ARG170 3.8 21.4 1.0 HD3 A:ARG71 3.8 18.2 1.0 CD A:ARG75 3.9 20.1 1.0 O A:ALA42 3.9 16.9 1.0 HA A:VAL72 3.9 19.8 1.0 HH11 A:ARG170 4.0 25.6 1.0 CD A:ARG71 4.1 15.1 1.0 HH21 A:ARG170 4.1 26.2 1.0 HB3 A:ALA42 4.2 17.0 1.0 HD2 A:ARG75 4.3 24.1 1.0 CG1 A:VAL72 4.3 17.7 1.0 CG A:ARG71 4.3 14.9 1.0 CZ A:ARG75 4.4 20.6 1.0 CB A:ARG75 4.4 20.4 1.0 H A:ALA42 4.5 16.6 1.0 NE A:ARG75 4.6 20.2 1.0 O A:HOH632 4.6 31.7 1.0 HB3 A:ARG75 4.6 24.5 1.0 HG13 A:VAL72 4.6 21.2 1.0 CG A:ARG75 4.6 20.5 1.0 HH11 A:ARG71 4.7 17.4 1.0 O A:ARG71 4.7 16.5 1.0 HG11 A:VAL72 4.8 21.2 1.0 HG3 A:ARG75 4.8 24.6 1.0 CA A:VAL72 4.8 16.5 1.0 O A:HOH613 4.8 27.3 1.0 HG3 A:ARG71 4.9 17.9 1.0 C A:ALA42 5.0 15.7 1.0

Chlorine binding site 2 out of 2 in the Lpoa N-Terminal Domain From Haemophilus Influenzae; Monoclinic Form at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lpoa N-Terminal Domain From Haemophilus Influenzae; Monoclinic Form at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:19.1 occ:1.00 HH12 B:ARG170 2.5 19.9 1.0 HH11 B:ARG75 2.5 20.1 1.0 HH22 B:ARG170 2.6 20.4 1.0 HD3 B:ARG75 2.8 20.8 1.0 O B:HOH681 3.1 32.3 1.0 O B:HOH528 3.2 13.9 1.0 HG12 B:VAL72 3.2 21.2 0.8 NH1 B:ARG75 3.3 16.8 1.0 NH1 B:ARG170 3.3 16.6 1.0 NH2 B:ARG170 3.4 17.0 1.0 HD2 B:ARG71 3.5 17.1 1.0 HB2 B:ARG75 3.5 20.6 1.0 HH12 B:ARG75 3.6 20.1 1.0 HG2 B:ARG71 3.6 16.2 1.0 HD3 B:ARG71 3.7 17.1 1.0 CD B:ARG75 3.8 17.4 1.0 HA B:VAL72 3.8 12.9 0.1 CZ B:ARG170 3.8 17.0 1.0 HA B:VAL72 3.8 18.4 0.8 O B:ALA42 3.9 14.1 1.0 CD B:ARG71 4.0 14.2 1.0 HH11 B:ARG170 4.0 19.9 1.0 HB3 B:ALA42 4.1 15.8 1.0 HH21 B:ARG170 4.1 20.4 1.0 HD2 B:ARG75 4.1 20.8 1.0 CG1 B:VAL72 4.2 17.6 0.8 CZ B:ARG75 4.3 16.8 1.0 CB B:ARG75 4.3 17.2 1.0 CG B:ARG71 4.3 13.5 1.0 H B:ALA42 4.4 15.5 1.0 HB3 B:ARG75 4.4 20.6 1.0 NE B:ARG75 4.5 16.7 1.0 HB B:VAL72 4.6 11.1 0.1 HG13 B:VAL72 4.6 21.2 0.8 CG B:ARG75 4.6 17.5 1.0 HH11 B:ARG71 4.6 16.9 1.0 HG11 B:VAL72 4.6 21.2 0.8 CA B:VAL72 4.7 15.3 0.8 CA B:VAL72 4.7 10.8 0.1 HG3 B:ARG75 4.7 21.0 1.0 O B:ARG71 4.7 13.9 1.0 HB B:VAL72 4.8 20.8 0.8 CB B:VAL72 4.8 17.4 0.8 O B:HOH527 4.8 26.6 1.0 HG23 B:VAL72 4.8 10.6 0.1 C B:ALA42 4.9 13.1 1.0 O B:HOH585 4.9 23.1 1.0 HG3 B:ARG71 4.9 16.2 1.0 CB B:ALA42 5.0 13.2 1.0 C B:ARG71 5.0 13.0 1.0

A.Kelley, J.Vijayalakshmi, M.A.Saper. Crystal Structures of the Amino-Terminal Domain of Lpoa From Escherichia Coli and Haemophilus Influenzae. Acta Crystallogr.,Sect.F V. 75 368 2019.
ISSN: ESSN 2053-230X
PubMed: 31045566
DOI: 10.1107/S2053230X19004011