Chlorine in PDB 6ddd: Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-5

The structure of Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-5 also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Chlorine atom in the Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-5 (pdb code 6ddd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-5, PDB code: 6ddd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-5 within 5.0Å range: probe atom residue distance (Å) B Occ 1:Cl3001 b:27.1 occ:1.00 CL33 1:G6V3001 0.0 27.1 1.0 C31 1:G6V3001 1.8 27.1 1.0 H311 1:G6V3001 2.3 27.1 1.0 C30 1:G6V3001 2.8 27.1 1.0 CL44 1:G6V3001 2.9 27.1 1.0 N2 1:G2088 3.1 20.4 1.0 O32 1:G6V3001 3.3 27.1 1.0 N6 1:A2089 3.5 33.1 1.0 C2 1:G2088 3.7 20.4 1.0 N7 1:A2089 3.8 33.1 1.0 N29 1:G6V3001 3.8 27.1 1.0 HN29 1:G6V3001 3.9 27.1 1.0 N3 1:G2088 4.2 20.4 1.0 C6 1:A2089 4.3 33.1 1.0 C5 1:A2089 4.4 33.1 1.0 N1 1:G2088 4.4 20.4 1.0 C8 1:A2089 4.9 33.1 1.0

Chlorine binding site 2 out of 2 in the Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-5 within 5.0Å range: probe atom residue distance (Å) B Occ 1:Cl3001 b:27.1 occ:1.00 CL44 1:G6V3001 0.0 27.1 1.0 C31 1:G6V3001 1.8 27.1 1.0 H311 1:G6V3001 2.3 27.1 1.0 C30 1:G6V3001 2.8 27.1 1.0 CL33 1:G6V3001 2.9 27.1 1.0 O32 1:G6V3001 3.0 27.1 1.0 N6 1:A2089 3.9 33.1 1.0 N29 1:G6V3001 4.0 27.1 1.0 O4' 1:G2532 4.3 27.1 1.0 HN29 1:G6V3001 4.3 27.1 1.0 C1' 1:G2532 4.5 27.1 1.0

M.J.Belousoff, H.Venugopal, A.Wright, S.Seoner, I.Stuart, C.Stubenrauch, R.S.Bamert, D.W.Lupton, T.Lithgow. Cryoem-Guided Development of Antibiotics For Drug-Resistant Bacteria. Chemmedchem V. 14 527 2019.
ISSN: ESSN 1860-7187
PubMed: 30667174
DOI: 10.1002/CMDC.201900042