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Chlorine in PDB 6dt4: 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp

Protein crystallography data

The structure of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp, PDB code: 6dt4 was solved by G.Minasov, L.Shuvalova, O.Kiryukhina, J.T.H.Ritzert, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.61 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.876, 82.800, 106.350, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp (pdb code 6dt4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp, PDB code: 6dt4:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 6dt4

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Chlorine binding site 1 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:28.5
occ:0.40
OE1 A:GLU35 2.1 42.4 0.6
O A:HOH456 2.9 40.5 1.0
N A:HIS32 2.9 26.6 0.5
N A:HIS32 2.9 26.6 0.5
CD A:GLU35 3.2 41.2 0.6
O A:HOH452 3.2 53.2 1.0
CB A:GLU35 3.5 36.2 0.6
CB A:GLU35 3.6 37.1 0.4
O A:HIS32 3.6 25.4 0.5
O A:HIS32 3.6 25.1 0.5
ND1 A:HIS32 3.7 31.4 0.5
CB A:HIS32 3.7 29.7 0.5
CA A:ILE31 3.7 26.0 1.0
CA A:HIS32 3.8 27.4 0.5
CG A:GLU35 3.8 38.9 0.6
CA A:HIS32 3.8 27.4 0.5
C A:ILE31 3.8 25.6 1.0
O A:HOH424 3.8 38.9 0.5
CB A:HIS32 3.8 29.6 0.5
CG A:GLU35 4.0 39.2 0.4
CD2 A:HIS32 4.1 31.9 0.5
C A:HIS32 4.2 26.1 0.5
C A:HIS32 4.2 26.2 0.5
OE2 A:GLU35 4.2 45.6 0.6
CG A:HIS32 4.2 31.0 0.5
CG A:HIS32 4.3 31.1 0.5
CG2 A:ILE31 4.3 25.3 1.0
CG A:ARG83 4.5 25.6 1.0
CB A:ILE31 4.5 25.5 1.0
O A:LEU30 4.5 27.4 1.0
O A:HOH443 4.6 29.8 0.5
N A:ILE31 4.8 26.4 1.0
CE1 A:HIS32 4.8 31.7 0.5
NE A:ARG83 4.8 23.6 1.0
CA A:GLU35 4.9 34.7 0.6
CA A:GLU35 4.9 35.4 0.4
O A:ILE31 5.0 25.1 1.0

Chlorine binding site 2 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 2 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:59.5
occ:0.50
CL A:CL303 0.0 59.5 0.5
CL A:CL303 1.7 65.8 0.5
N A:ARG170 3.2 41.8 1.0
CA A:THR169 3.6 47.9 1.0
CG A:ARG170 3.7 47.3 1.0
C A:THR169 3.9 43.8 1.0
CD A:ARG170 3.9 52.5 1.0
CB A:THR169 4.0 50.1 1.0
CB A:ARG170 4.0 40.8 1.0
NZ A:LYS202 4.1 0.2 1.0
NE A:ARG170 4.1 57.0 1.0
CD A:LYS202 4.1 0.2 1.0
O A:HOH476 4.2 45.3 1.0
CA A:ARG170 4.2 38.9 1.0
O A:ILE168 4.4 58.4 1.0
NH2 A:ARG181 4.4 69.2 1.0
CG2 A:THR169 4.5 53.0 1.0
CE A:LYS202 4.7 0.7 1.0
O A:GLY201 4.7 0.4 1.0
N A:THR169 4.7 51.3 1.0
CA A:LYS202 4.8 0.9 1.0
C A:ILE168 5.0 56.0 1.0

Chlorine binding site 3 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 3 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:65.8
occ:0.50
CL A:CL303 0.0 65.8 0.5
CL A:CL303 1.7 59.5 0.5
O A:HOH476 2.7 45.3 1.0
NH2 A:ARG181 3.2 69.2 1.0
N A:ARG170 3.5 41.8 1.0
NZ A:LYS202 3.6 0.2 1.0
CB A:THR169 3.8 50.1 1.0
CA A:THR169 4.0 47.9 1.0
CB A:ARG170 4.0 40.8 1.0
CZ A:ARG181 4.1 68.0 1.0
NE A:ARG181 4.2 58.8 1.0
CG A:ARG170 4.2 47.3 1.0
CD A:ARG170 4.3 52.5 1.0
C A:THR169 4.3 43.8 1.0
CG2 A:THR169 4.3 53.0 1.0
CA A:ARG170 4.4 38.9 1.0
CD A:LYS202 4.6 0.2 1.0
CE A:LYS202 4.7 0.7 1.0
N A:GLN171 4.7 36.6 0.5
N A:GLN171 4.8 36.6 0.5
NE A:ARG170 4.8 57.0 1.0
OG1 A:THR169 4.9 47.4 1.0

Chlorine binding site 4 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 4 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:48.4
occ:0.50
CL A:CL304 0.0 48.4 0.5
CL A:CL304 1.8 42.6 0.5
CG2 A:VAL140 3.5 36.9 1.0
O A:HOH413 3.6 39.8 1.0
N A:VAL140 3.8 35.4 1.0
O B:HOH477 4.1 36.5 1.0
CA A:ASP139 4.3 37.5 1.0
CB A:VAL140 4.3 35.8 1.0
CB A:ASP139 4.5 40.6 1.0
C A:ASP139 4.5 35.4 1.0
CA A:VAL140 4.6 34.6 1.0

Chlorine binding site 5 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 5 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:42.6
occ:0.50
CL A:CL304 0.0 42.6 0.5
CL A:CL304 1.8 48.4 0.5
N A:VAL140 3.5 35.4 1.0
O A:HOH496 3.6 38.5 0.5
CB A:ASP139 3.6 40.6 1.0
CG2 A:VAL140 3.9 36.9 1.0
CA A:ASP139 3.9 37.5 1.0
CB A:VAL140 4.2 35.8 1.0
C A:ASP139 4.2 35.4 1.0
CA A:VAL140 4.4 34.6 1.0
CG A:ASP139 4.7 45.0 1.0
O A:HOH413 4.7 39.8 1.0

Reference:

G.Minasov, L.Shuvalova, O.Kiryukhina, J.T.H.Ritzert, W.F.Anderson, K.J.F.Satchell, A.Joachimiak. 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp. To Be Published.
Page generated: Sat Jul 12 13:01:09 2025

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