Chlorine in PDB 6dt4: 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp

Protein crystallography data

The structure of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp, PDB code: 6dt4 was solved by G.Minasov, L.Shuvalova, O.Kiryukhina, J.T.H.Ritzert, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.61 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.876, 82.800, 106.350, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp (pdb code 6dt4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp, PDB code: 6dt4:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 1 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:28.5
occ:0.40
OE1 A:GLU35 2.1 42.4 0.6
O A:HOH456 2.9 40.5 1.0
N A:HIS32 2.9 26.6 0.5
N A:HIS32 2.9 26.6 0.5
CD A:GLU35 3.2 41.2 0.6
O A:HOH452 3.2 53.2 1.0
CB A:GLU35 3.5 36.2 0.6
CB A:GLU35 3.6 37.1 0.4
O A:HIS32 3.6 25.4 0.5
O A:HIS32 3.6 25.1 0.5
ND1 A:HIS32 3.7 31.4 0.5
CB A:HIS32 3.7 29.7 0.5
CA A:ILE31 3.7 26.0 1.0
CA A:HIS32 3.8 27.4 0.5
CG A:GLU35 3.8 38.9 0.6
CA A:HIS32 3.8 27.4 0.5
C A:ILE31 3.8 25.6 1.0
O A:HOH424 3.8 38.9 0.5
CB A:HIS32 3.8 29.6 0.5
CG A:GLU35 4.0 39.2 0.4
CD2 A:HIS32 4.1 31.9 0.5
C A:HIS32 4.2 26.1 0.5
C A:HIS32 4.2 26.2 0.5
OE2 A:GLU35 4.2 45.6 0.6
CG A:HIS32 4.2 31.0 0.5
CG A:HIS32 4.3 31.1 0.5
CG2 A:ILE31 4.3 25.3 1.0
CG A:ARG83 4.5 25.6 1.0
CB A:ILE31 4.5 25.5 1.0
O A:LEU30 4.5 27.4 1.0
O A:HOH443 4.6 29.8 0.5
N A:ILE31 4.8 26.4 1.0
CE1 A:HIS32 4.8 31.7 0.5
NE A:ARG83 4.8 23.6 1.0
CA A:GLU35 4.9 34.7 0.6
CA A:GLU35 4.9 35.4 0.4
O A:ILE31 5.0 25.1 1.0

Chlorine binding site 2 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 2 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:59.5
occ:0.50
CL A:CL303 0.0 59.5 0.5
CL A:CL303 1.7 65.8 0.5
N A:ARG170 3.2 41.8 1.0
CA A:THR169 3.6 47.9 1.0
CG A:ARG170 3.7 47.3 1.0
C A:THR169 3.9 43.8 1.0
CD A:ARG170 3.9 52.5 1.0
CB A:THR169 4.0 50.1 1.0
CB A:ARG170 4.0 40.8 1.0
NZ A:LYS202 4.1 0.2 1.0
NE A:ARG170 4.1 57.0 1.0
CD A:LYS202 4.1 0.2 1.0
O A:HOH476 4.2 45.3 1.0
CA A:ARG170 4.2 38.9 1.0
O A:ILE168 4.4 58.4 1.0
NH2 A:ARG181 4.4 69.2 1.0
CG2 A:THR169 4.5 53.0 1.0
CE A:LYS202 4.7 0.7 1.0
O A:GLY201 4.7 0.4 1.0
N A:THR169 4.7 51.3 1.0
CA A:LYS202 4.8 0.9 1.0
C A:ILE168 5.0 56.0 1.0

Chlorine binding site 3 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 3 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:65.8
occ:0.50
CL A:CL303 0.0 65.8 0.5
CL A:CL303 1.7 59.5 0.5
O A:HOH476 2.7 45.3 1.0
NH2 A:ARG181 3.2 69.2 1.0
N A:ARG170 3.5 41.8 1.0
NZ A:LYS202 3.6 0.2 1.0
CB A:THR169 3.8 50.1 1.0
CA A:THR169 4.0 47.9 1.0
CB A:ARG170 4.0 40.8 1.0
CZ A:ARG181 4.1 68.0 1.0
NE A:ARG181 4.2 58.8 1.0
CG A:ARG170 4.2 47.3 1.0
CD A:ARG170 4.3 52.5 1.0
C A:THR169 4.3 43.8 1.0
CG2 A:THR169 4.3 53.0 1.0
CA A:ARG170 4.4 38.9 1.0
CD A:LYS202 4.6 0.2 1.0
CE A:LYS202 4.7 0.7 1.0
N A:GLN171 4.7 36.6 0.5
N A:GLN171 4.8 36.6 0.5
NE A:ARG170 4.8 57.0 1.0
OG1 A:THR169 4.9 47.4 1.0

Chlorine binding site 4 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 4 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:48.4
occ:0.50
CL A:CL304 0.0 48.4 0.5
CL A:CL304 1.8 42.6 0.5
CG2 A:VAL140 3.5 36.9 1.0
O A:HOH413 3.6 39.8 1.0
N A:VAL140 3.8 35.4 1.0
O B:HOH477 4.1 36.5 1.0
CA A:ASP139 4.3 37.5 1.0
CB A:VAL140 4.3 35.8 1.0
CB A:ASP139 4.5 40.6 1.0
C A:ASP139 4.5 35.4 1.0
CA A:VAL140 4.6 34.6 1.0

Chlorine binding site 5 out of 5 in 6dt4

Go back to Chlorine Binding Sites List in 6dt4
Chlorine binding site 5 out of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:42.6
occ:0.50
CL A:CL304 0.0 42.6 0.5
CL A:CL304 1.8 48.4 0.5
N A:VAL140 3.5 35.4 1.0
O A:HOH496 3.6 38.5 0.5
CB A:ASP139 3.6 40.6 1.0
CG2 A:VAL140 3.9 36.9 1.0
CA A:ASP139 3.9 37.5 1.0
CB A:VAL140 4.2 35.8 1.0
C A:ASP139 4.2 35.4 1.0
CA A:VAL140 4.4 34.6 1.0
CG A:ASP139 4.7 45.0 1.0
O A:HOH413 4.7 39.8 1.0

Reference:

G.Minasov, L.Shuvalova, O.Kiryukhina, J.T.H.Ritzert, W.F.Anderson, K.J.F.Satchell, A.Joachimiak. 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp. To Be Published.
Page generated: Sat Dec 12 12:53:49 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy