Chlorine in PDB 6dt4: 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp
Protein crystallography data
The structure of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp, PDB code: 6dt4
was solved by
G.Minasov,
L.Shuvalova,
O.Kiryukhina,
J.T.H.Ritzert,
W.F.Anderson,
K.J.F.Satchell,
A.Joachimiak,
Center For Structural Genomics Ofinfectious Diseases (Csgid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.61 /
1.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.876,
82.800,
106.350,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.5 /
20.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp
(pdb code 6dt4). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp, PDB code: 6dt4:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 6dt4
Go back to
Chlorine Binding Sites List in 6dt4
Chlorine binding site 1 out
of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:28.5
occ:0.40
|
OE1
|
A:GLU35
|
2.1
|
42.4
|
0.6
|
O
|
A:HOH456
|
2.9
|
40.5
|
1.0
|
N
|
A:HIS32
|
2.9
|
26.6
|
0.5
|
N
|
A:HIS32
|
2.9
|
26.6
|
0.5
|
CD
|
A:GLU35
|
3.2
|
41.2
|
0.6
|
O
|
A:HOH452
|
3.2
|
53.2
|
1.0
|
CB
|
A:GLU35
|
3.5
|
36.2
|
0.6
|
CB
|
A:GLU35
|
3.6
|
37.1
|
0.4
|
O
|
A:HIS32
|
3.6
|
25.4
|
0.5
|
O
|
A:HIS32
|
3.6
|
25.1
|
0.5
|
ND1
|
A:HIS32
|
3.7
|
31.4
|
0.5
|
CB
|
A:HIS32
|
3.7
|
29.7
|
0.5
|
CA
|
A:ILE31
|
3.7
|
26.0
|
1.0
|
CA
|
A:HIS32
|
3.8
|
27.4
|
0.5
|
CG
|
A:GLU35
|
3.8
|
38.9
|
0.6
|
CA
|
A:HIS32
|
3.8
|
27.4
|
0.5
|
C
|
A:ILE31
|
3.8
|
25.6
|
1.0
|
O
|
A:HOH424
|
3.8
|
38.9
|
0.5
|
CB
|
A:HIS32
|
3.8
|
29.6
|
0.5
|
CG
|
A:GLU35
|
4.0
|
39.2
|
0.4
|
CD2
|
A:HIS32
|
4.1
|
31.9
|
0.5
|
C
|
A:HIS32
|
4.2
|
26.1
|
0.5
|
C
|
A:HIS32
|
4.2
|
26.2
|
0.5
|
OE2
|
A:GLU35
|
4.2
|
45.6
|
0.6
|
CG
|
A:HIS32
|
4.2
|
31.0
|
0.5
|
CG
|
A:HIS32
|
4.3
|
31.1
|
0.5
|
CG2
|
A:ILE31
|
4.3
|
25.3
|
1.0
|
CG
|
A:ARG83
|
4.5
|
25.6
|
1.0
|
CB
|
A:ILE31
|
4.5
|
25.5
|
1.0
|
O
|
A:LEU30
|
4.5
|
27.4
|
1.0
|
O
|
A:HOH443
|
4.6
|
29.8
|
0.5
|
N
|
A:ILE31
|
4.8
|
26.4
|
1.0
|
CE1
|
A:HIS32
|
4.8
|
31.7
|
0.5
|
NE
|
A:ARG83
|
4.8
|
23.6
|
1.0
|
CA
|
A:GLU35
|
4.9
|
34.7
|
0.6
|
CA
|
A:GLU35
|
4.9
|
35.4
|
0.4
|
O
|
A:ILE31
|
5.0
|
25.1
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 6dt4
Go back to
Chlorine Binding Sites List in 6dt4
Chlorine binding site 2 out
of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:59.5
occ:0.50
|
CL
|
A:CL303
|
0.0
|
59.5
|
0.5
|
CL
|
A:CL303
|
1.7
|
65.8
|
0.5
|
N
|
A:ARG170
|
3.2
|
41.8
|
1.0
|
CA
|
A:THR169
|
3.6
|
47.9
|
1.0
|
CG
|
A:ARG170
|
3.7
|
47.3
|
1.0
|
C
|
A:THR169
|
3.9
|
43.8
|
1.0
|
CD
|
A:ARG170
|
3.9
|
52.5
|
1.0
|
CB
|
A:THR169
|
4.0
|
50.1
|
1.0
|
CB
|
A:ARG170
|
4.0
|
40.8
|
1.0
|
NZ
|
A:LYS202
|
4.1
|
0.2
|
1.0
|
NE
|
A:ARG170
|
4.1
|
57.0
|
1.0
|
CD
|
A:LYS202
|
4.1
|
0.2
|
1.0
|
O
|
A:HOH476
|
4.2
|
45.3
|
1.0
|
CA
|
A:ARG170
|
4.2
|
38.9
|
1.0
|
O
|
A:ILE168
|
4.4
|
58.4
|
1.0
|
NH2
|
A:ARG181
|
4.4
|
69.2
|
1.0
|
CG2
|
A:THR169
|
4.5
|
53.0
|
1.0
|
CE
|
A:LYS202
|
4.7
|
0.7
|
1.0
|
O
|
A:GLY201
|
4.7
|
0.4
|
1.0
|
N
|
A:THR169
|
4.7
|
51.3
|
1.0
|
CA
|
A:LYS202
|
4.8
|
0.9
|
1.0
|
C
|
A:ILE168
|
5.0
|
56.0
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 6dt4
Go back to
Chlorine Binding Sites List in 6dt4
Chlorine binding site 3 out
of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:65.8
occ:0.50
|
CL
|
A:CL303
|
0.0
|
65.8
|
0.5
|
CL
|
A:CL303
|
1.7
|
59.5
|
0.5
|
O
|
A:HOH476
|
2.7
|
45.3
|
1.0
|
NH2
|
A:ARG181
|
3.2
|
69.2
|
1.0
|
N
|
A:ARG170
|
3.5
|
41.8
|
1.0
|
NZ
|
A:LYS202
|
3.6
|
0.2
|
1.0
|
CB
|
A:THR169
|
3.8
|
50.1
|
1.0
|
CA
|
A:THR169
|
4.0
|
47.9
|
1.0
|
CB
|
A:ARG170
|
4.0
|
40.8
|
1.0
|
CZ
|
A:ARG181
|
4.1
|
68.0
|
1.0
|
NE
|
A:ARG181
|
4.2
|
58.8
|
1.0
|
CG
|
A:ARG170
|
4.2
|
47.3
|
1.0
|
CD
|
A:ARG170
|
4.3
|
52.5
|
1.0
|
C
|
A:THR169
|
4.3
|
43.8
|
1.0
|
CG2
|
A:THR169
|
4.3
|
53.0
|
1.0
|
CA
|
A:ARG170
|
4.4
|
38.9
|
1.0
|
CD
|
A:LYS202
|
4.6
|
0.2
|
1.0
|
CE
|
A:LYS202
|
4.7
|
0.7
|
1.0
|
N
|
A:GLN171
|
4.7
|
36.6
|
0.5
|
N
|
A:GLN171
|
4.8
|
36.6
|
0.5
|
NE
|
A:ARG170
|
4.8
|
57.0
|
1.0
|
OG1
|
A:THR169
|
4.9
|
47.4
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 6dt4
Go back to
Chlorine Binding Sites List in 6dt4
Chlorine binding site 4 out
of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:48.4
occ:0.50
|
CL
|
A:CL304
|
0.0
|
48.4
|
0.5
|
CL
|
A:CL304
|
1.8
|
42.6
|
0.5
|
CG2
|
A:VAL140
|
3.5
|
36.9
|
1.0
|
O
|
A:HOH413
|
3.6
|
39.8
|
1.0
|
N
|
A:VAL140
|
3.8
|
35.4
|
1.0
|
O
|
B:HOH477
|
4.1
|
36.5
|
1.0
|
CA
|
A:ASP139
|
4.3
|
37.5
|
1.0
|
CB
|
A:VAL140
|
4.3
|
35.8
|
1.0
|
CB
|
A:ASP139
|
4.5
|
40.6
|
1.0
|
C
|
A:ASP139
|
4.5
|
35.4
|
1.0
|
CA
|
A:VAL140
|
4.6
|
34.6
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 6dt4
Go back to
Chlorine Binding Sites List in 6dt4
Chlorine binding site 5 out
of 5 in the 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of 1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:42.6
occ:0.50
|
CL
|
A:CL304
|
0.0
|
42.6
|
0.5
|
CL
|
A:CL304
|
1.8
|
48.4
|
0.5
|
N
|
A:VAL140
|
3.5
|
35.4
|
1.0
|
O
|
A:HOH496
|
3.6
|
38.5
|
0.5
|
CB
|
A:ASP139
|
3.6
|
40.6
|
1.0
|
CG2
|
A:VAL140
|
3.9
|
36.9
|
1.0
|
CA
|
A:ASP139
|
3.9
|
37.5
|
1.0
|
CB
|
A:VAL140
|
4.2
|
35.8
|
1.0
|
C
|
A:ASP139
|
4.2
|
35.4
|
1.0
|
CA
|
A:VAL140
|
4.4
|
34.6
|
1.0
|
CG
|
A:ASP139
|
4.7
|
45.0
|
1.0
|
O
|
A:HOH413
|
4.7
|
39.8
|
1.0
|
|
Reference:
G.Minasov,
L.Shuvalova,
O.Kiryukhina,
J.T.H.Ritzert,
W.F.Anderson,
K.J.F.Satchell,
A.Joachimiak.
1.8 Angstrom Resolution Crystal Structure of Camp-Regulatory Protein From Yersinia Pestis in Complex with Camp. To Be Published.
Page generated: Sat Jul 27 21:48:45 2024
|