Atomistry » Chlorine » PDB 6e77-6el0 » 6ebc
Atomistry »
  Chlorine »
    PDB 6e77-6el0 »
      6ebc »

Chlorine in PDB 6ebc: Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt

Protein crystallography data

The structure of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt, PDB code: 6ebc was solved by R.M.Domingos, R.D.Teixeira, T.G.P.Alegria, P.S.Vieira, M.T.Murakami, L.E.S.Netto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 1.87
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 88.160, 88.160, 169.916, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 21.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt (pdb code 6ebc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt, PDB code: 6ebc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 6ebc

Go back to Chlorine Binding Sites List in 6ebc
Chlorine binding site 1 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:39.8
occ:1.00
N A:SER77 3.1 38.9 1.0
C A:LEU105 3.3 42.4 1.0
N A:GLY107 3.4 45.5 1.0
CB A:SER77 3.4 38.6 1.0
CA A:LEU105 3.4 40.7 1.0
OG A:SER77 3.6 41.6 1.0
N A:PRO106 3.6 43.4 1.0
CD A:PRO106 3.7 41.1 1.0
CA A:SER77 3.8 38.8 1.0
CB A:LEU105 3.9 41.3 1.0
O A:LEU105 3.9 43.8 1.0
CA A:GLY107 4.0 47.6 1.0
C A:LEU76 4.0 41.1 1.0
CA A:LEU76 4.0 42.4 1.0
CG A:LEU108 4.1 48.4 1.0
CB A:ALA80 4.3 32.5 1.0
CD2 A:LEU105 4.3 39.3 1.0
N A:LEU108 4.3 48.1 1.0
CB A:LEU76 4.4 41.4 1.0
C A:PRO106 4.4 47.6 1.0
C A:GLY107 4.5 49.4 1.0
CD2 A:LEU76 4.5 45.5 1.0
CD1 A:LEU108 4.5 47.8 1.0
CG A:PRO106 4.6 43.6 1.0
CA A:PRO106 4.6 45.3 1.0
O A:SER77 4.7 33.3 1.0
CG A:LEU105 4.7 39.7 1.0
C A:SER77 4.8 35.3 1.0
N A:LEU105 4.8 38.1 1.0
CA A:ALA80 4.9 33.1 1.0
CD2 A:LEU108 4.9 52.2 1.0
CB A:LEU108 4.9 49.5 1.0

Chlorine binding site 2 out of 7 in 6ebc

Go back to Chlorine Binding Sites List in 6ebc
Chlorine binding site 2 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:43.2
occ:1.00
OG A:SER25 2.6 39.4 1.0
OG1 A:THR10 2.8 33.5 1.0
N A:ASP26 3.3 31.1 1.0
O A:HOH303 3.4 33.6 1.0
N A:GLN11 3.5 32.5 1.0
N A:SER25 3.6 30.8 1.0
CG A:ASP26 3.6 31.1 1.0
CB A:ASP26 3.7 32.0 1.0
O A:GLN11 3.7 30.2 1.0
CB A:THR10 3.7 32.4 1.0
CA A:THR10 3.8 34.1 1.0
NE2 C:GLN51 3.8 27.1 1.0
CB A:SER25 3.9 36.0 1.0
OD2 A:ASP26 3.9 31.3 1.0
OD1 A:ASP26 3.9 29.0 1.0
C A:SER25 4.0 32.2 1.0
CA A:SER25 4.0 33.5 1.0
CA A:ASP26 4.1 32.4 1.0
C A:THR10 4.2 33.2 1.0
CB A:SER24 4.4 26.8 1.0
C A:SER24 4.5 29.4 1.0
CA A:GLN11 4.6 33.6 1.0
C A:GLN11 4.6 31.1 1.0
CA A:SER24 4.8 28.2 1.0
CD C:GLN51 4.9 28.2 1.0
OG A:SER24 4.9 26.2 1.0
CB A:GLN11 4.9 36.0 1.0
O A:ARG9 5.0 38.2 1.0
O A:SER25 5.0 32.2 1.0

Chlorine binding site 3 out of 7 in 6ebc

Go back to Chlorine Binding Sites List in 6ebc
Chlorine binding site 3 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:51.9
occ:1.00
N B:SER77 3.1 64.2 1.0
N B:GLY107 3.2 53.9 1.0
CA B:LEU105 3.4 45.6 1.0
C B:LEU105 3.4 47.4 1.0
CB B:SER77 3.6 63.5 1.0
N B:PRO106 3.6 49.1 1.0
CA B:GLY107 3.7 56.2 1.0
CB B:LEU105 3.8 46.2 1.0
CD B:PRO106 3.8 48.1 1.0
CA B:LEU76 3.8 66.0 1.0
O B:LEU105 3.9 49.5 1.0
CA B:SER77 3.9 62.9 1.0
C B:LEU76 3.9 67.6 1.0
CD2 B:LEU105 3.9 44.0 1.0
CG B:LEU108 4.0 48.2 1.0
N B:LEU108 4.1 55.1 1.0
CD2 B:LEU76 4.2 62.7 1.0
CB B:LEU76 4.2 62.9 1.0
C B:GLY107 4.2 56.5 1.0
C B:PRO106 4.3 54.6 1.0
CB B:ALA80 4.4 45.9 1.0
CG B:LEU105 4.5 44.1 1.0
CA B:PRO106 4.6 52.6 1.0
OG B:SER77 4.6 63.4 1.0
CD1 B:LEU108 4.6 46.0 1.0
CG B:PRO106 4.6 50.0 1.0
O B:SER77 4.7 55.4 1.0
N B:LEU105 4.8 44.3 1.0
CB B:LEU108 4.8 50.1 1.0
CD2 B:LEU108 4.8 51.2 1.0
C B:SER77 4.8 59.0 1.0
CG B:LEU76 4.8 62.5 1.0
CA B:ALA80 4.9 47.0 1.0
O B:THR75 4.9 76.2 1.0

Chlorine binding site 4 out of 7 in 6ebc

Go back to Chlorine Binding Sites List in 6ebc
Chlorine binding site 4 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:55.1
occ:1.00
NE2 B:GLN11 2.8 53.7 1.0
OG1 B:THR13 2.9 40.6 1.0
N B:THR13 3.5 35.6 1.0
CG B:GLN11 3.5 50.2 1.0
C B:ALA12 3.6 36.6 1.0
CB B:SER25 3.6 49.6 1.0
CD B:GLN11 3.6 54.7 1.0
N B:SER25 3.6 42.6 1.0
O B:GLN11 3.7 39.2 1.0
CA B:SER25 3.7 46.3 1.0
C B:GLN11 3.7 39.5 1.0
CB B:THR13 3.7 38.0 1.0
CA B:ALA12 3.7 35.9 1.0
N B:ALA12 3.8 36.8 1.0
O B:GLU23 3.8 37.9 1.0
CB B:GLN11 4.0 46.3 1.0
CA B:THR13 4.2 36.4 1.0
O B:ALA12 4.2 37.0 1.0
C B:SER24 4.2 39.8 1.0
OG B:SER25 4.4 54.5 1.0
CA B:GLN11 4.5 41.5 1.0
OG D:SER83 4.8 41.0 1.0
OE1 B:GLN11 4.8 59.9 1.0
O B:SER24 4.8 39.9 1.0
CA B:SER24 4.8 37.0 1.0
C B:GLU23 4.9 36.3 1.0

Chlorine binding site 5 out of 7 in 6ebc

Go back to Chlorine Binding Sites List in 6ebc
Chlorine binding site 5 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:45.7
occ:1.00
N C:GLY107 3.1 49.7 1.0
N C:SER77 3.1 51.2 1.0
C C:LEU105 3.3 43.9 1.0
CA C:LEU105 3.4 42.8 1.0
N C:PRO106 3.5 45.0 1.0
CB C:SER77 3.5 53.2 1.0
CA C:GLY107 3.6 52.8 1.0
CD C:PRO106 3.8 44.2 1.0
O C:LEU105 3.8 45.0 1.0
CB C:LEU105 3.8 42.9 1.0
CA C:SER77 3.9 52.6 1.0
CA C:LEU76 4.0 56.3 1.0
N C:LEU108 4.0 50.7 1.0
C C:LEU76 4.0 54.9 1.0
CD2 C:LEU105 4.1 41.6 1.0
C C:GLY107 4.1 52.3 1.0
C C:PRO106 4.2 50.1 1.0
CG C:LEU108 4.2 49.0 1.0
CB C:ALA80 4.3 41.8 1.0
CB C:LEU76 4.3 52.6 1.0
OG C:SER77 4.4 52.3 1.0
CA C:PRO106 4.4 48.2 1.0
CD2 C:LEU76 4.4 54.9 1.0
CG C:PRO106 4.6 46.8 1.0
CG C:LEU105 4.6 40.6 1.0
O C:SER77 4.7 46.3 1.0
N C:LEU105 4.7 41.5 1.0
CA C:ALA80 4.8 41.3 1.0
CD1 C:LEU108 4.8 47.0 1.0
C C:SER77 4.8 49.8 1.0
CB C:LEU108 4.8 49.2 1.0
CG C:LEU76 5.0 52.7 1.0
CD2 C:LEU108 5.0 52.8 1.0
N C:ALA80 5.0 42.0 1.0

Chlorine binding site 6 out of 7 in 6ebc

Go back to Chlorine Binding Sites List in 6ebc
Chlorine binding site 6 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl203

b:45.0
occ:1.00
OG1 C:THR13 2.8 29.5 1.0
O B:HOH338 2.9 52.8 1.0
NE2 C:GLN11 2.9 41.9 1.0
CG C:GLN11 3.4 39.1 1.0
N C:THR13 3.5 28.8 1.0
CD C:GLN11 3.6 40.3 1.0
C C:ALA12 3.6 28.2 1.0
CB C:SER25 3.6 30.0 1.0
N C:SER25 3.6 26.7 1.0
CA C:SER25 3.6 29.0 1.0
CB C:THR13 3.7 29.9 1.0
CA C:ALA12 3.8 28.3 1.0
O C:GLU23 3.8 27.9 1.0
O C:GLN11 3.9 28.6 1.0
C C:GLN11 3.9 29.7 1.0
N C:ALA12 3.9 28.7 1.0
CB C:GLN11 4.1 33.8 1.0
O C:ALA12 4.2 28.5 1.0
CA C:THR13 4.2 29.2 1.0
C C:SER24 4.2 26.7 1.0
OG C:SER25 4.5 29.3 1.0
CA C:GLN11 4.6 31.0 1.0
OE1 C:GLN11 4.7 45.3 1.0
O C:SER24 4.7 28.4 1.0
OG A:SER83 4.8 33.8 1.0
CA C:SER24 4.8 26.0 1.0
C C:GLU23 4.9 27.6 1.0

Chlorine binding site 7 out of 7 in 6ebc

Go back to Chlorine Binding Sites List in 6ebc
Chlorine binding site 7 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl202

b:41.6
occ:1.00
OG D:SER25 2.7 41.4 1.0
OG1 D:THR10 2.8 33.0 1.0
N D:ASP26 3.3 32.3 1.0
N D:GLN11 3.4 35.4 1.0
N D:SER25 3.6 31.8 1.0
CG D:ASP26 3.7 30.6 1.0
O D:GLN11 3.7 31.4 1.0
CA D:THR10 3.7 35.1 1.0
CB D:THR10 3.7 32.6 1.0
CB D:ASP26 3.7 32.4 1.0
O D:HOH304 3.7 36.0 1.0
NE2 B:GLN51 3.8 31.9 1.0
OD1 D:ASP26 3.9 27.5 1.0
CB D:SER25 3.9 37.4 1.0
OD2 D:ASP26 4.0 33.1 1.0
C D:SER25 4.0 34.2 1.0
CA D:SER25 4.0 35.1 1.0
C D:THR10 4.1 36.8 1.0
CA D:ASP26 4.1 33.3 1.0
CB D:SER24 4.4 26.6 1.0
C D:SER24 4.5 31.1 1.0
CA D:GLN11 4.5 36.3 1.0
C D:GLN11 4.5 34.1 1.0
CA D:SER24 4.8 29.5 1.0
CB D:GLN11 4.8 40.6 1.0
O D:ARG9 4.9 35.3 1.0
CD B:GLN51 4.9 31.3 1.0
OG D:SER24 5.0 26.8 1.0

Reference:

R.M.Domingos, R.D.Teixeira, T.G.P.Alegria, P.S.Vieira, M.T.Murakami, L.E.S.Netto. Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt at 1.85 Angstroms Resolution To Be Published.
Page generated: Sat Jul 27 22:16:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy