Chlorine in PDB 6eg5: The Structure of Sb-1-202-Tubulin Complex

Protein crystallography data

The structure of The Structure of Sb-1-202-Tubulin Complex, PDB code: 6eg5 was solved by A.K.Banerjee, Y.Wang, H.Chen, D.Miller, W.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 105.541, 158.033, 181.870, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 23.6

Other elements in 6eg5:

The structure of The Structure of Sb-1-202-Tubulin Complex also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Calcium (Ca) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Sb-1-202-Tubulin Complex (pdb code 6eg5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Structure of Sb-1-202-Tubulin Complex, PDB code: 6eg5:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6eg5

Go back to Chlorine Binding Sites List in 6eg5
Chlorine binding site 1 out of 3 in the The Structure of Sb-1-202-Tubulin Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Sb-1-202-Tubulin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:74.2
occ:1.00
N A:LYS163 3.2 61.4 1.0
NZ A:LYS164 3.4 65.1 1.0
N A:GLY162 3.4 45.3 1.0
C A:TYR161 3.5 44.2 1.0
CB A:LYS163 3.6 72.0 1.0
CA A:TYR161 3.7 45.5 1.0
CG A:LYS163 3.9 77.1 1.0
CA A:LYS163 3.9 66.6 1.0
O A:TYR161 4.0 47.7 1.0
C A:GLY162 4.1 52.9 1.0
CA A:GLY162 4.2 49.4 1.0
CD A:LYS163 4.4 82.7 1.0
CG A:LYS164 4.5 56.1 1.0
CE A:LYS164 4.5 62.0 1.0
N A:LYS164 4.6 57.4 1.0
CB A:TYR161 4.6 43.6 1.0
C A:LYS163 4.6 63.4 1.0
N A:TYR161 4.8 49.4 1.0
O A:ASP160 4.8 49.5 1.0
CD A:LYS164 4.9 60.0 1.0

Chlorine binding site 2 out of 3 in 6eg5

Go back to Chlorine Binding Sites List in 6eg5
Chlorine binding site 2 out of 3 in the The Structure of Sb-1-202-Tubulin Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of Sb-1-202-Tubulin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl506

b:39.6
occ:1.00
CL B:J7S506 0.0 39.6 1.0
C6 B:J7S506 1.7 33.0 1.0
N1 B:J7S506 2.6 32.3 1.0
N2 B:J7S506 2.6 33.1 1.0
CD2 B:LEU240 3.3 30.8 1.0
CB B:ALA248 3.6 41.3 1.0
CG B:LEU240 3.7 32.0 1.0
C5 B:J7S506 3.8 29.1 1.0
C7 B:J7S506 3.9 31.9 1.0
O B:HOH692 3.9 40.9 1.0
CD2 B:LEU253 4.1 25.9 1.0
CB B:LEU253 4.2 25.1 1.0
CB B:CYS239 4.3 34.7 1.0
O B:VAL236 4.4 27.9 1.0
CD1 B:LEU253 4.4 25.6 1.0
CD1 B:LEU240 4.4 32.5 1.0
C8 B:J7S506 4.4 30.8 1.0
CG B:LEU253 4.4 25.5 1.0
O B:HOH607 4.6 29.7 1.0
O B:ASP249 4.6 28.1 1.0
N B:LEU240 4.6 35.2 1.0
C B:CYS239 4.7 36.2 1.0
N B:J7S506 4.9 26.8 1.0
CA B:ALA248 4.9 42.0 1.0
N B:ASP249 4.9 34.1 1.0
CB B:LEU240 4.9 33.0 1.0
C B:ALA248 4.9 35.7 1.0
N3 B:J7S506 5.0 31.7 1.0
C B:ASP249 5.0 29.1 1.0

Chlorine binding site 3 out of 3 in 6eg5

Go back to Chlorine Binding Sites List in 6eg5
Chlorine binding site 3 out of 3 in the The Structure of Sb-1-202-Tubulin Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of Sb-1-202-Tubulin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl603

b:48.8
occ:1.00
CL D:J7S603 0.0 48.8 1.0
C6 D:J7S603 1.8 45.6 1.0
N1 D:J7S603 2.6 42.9 1.0
N2 D:J7S603 2.7 44.5 1.0
CD2 D:LEU240 3.4 38.0 1.0
CB D:ALA248 3.6 44.1 1.0
CG D:LEU240 3.7 38.3 1.0
C5 D:J7S603 3.9 38.0 1.0
CB D:LEU253 3.9 30.2 1.0
C7 D:J7S603 4.0 42.2 1.0
CD2 D:LEU253 4.1 32.6 1.0
O D:HOH734 4.1 60.9 1.0
CD1 D:LEU253 4.2 31.4 1.0
CG D:LEU253 4.3 31.4 1.0
O D:ASP249 4.3 28.9 1.0
CB D:CYS239 4.3 44.0 1.0
N D:LEU240 4.4 40.2 1.0
O D:VAL236 4.5 47.1 1.0
C8 D:J7S603 4.5 41.0 1.0
CD1 D:LEU240 4.6 39.7 1.0
C D:CYS239 4.6 42.2 1.0
N D:ASP249 4.7 34.0 1.0
O D:HOH709 4.7 47.4 1.0
C D:ASP249 4.8 31.4 1.0
C D:ALA248 4.8 38.0 1.0
CA D:ALA248 4.9 41.6 1.0
CB D:LEU240 4.9 37.7 1.0
N D:J7S603 4.9 33.2 1.0
CA D:LEU253 4.9 28.6 1.0
CA D:CYS239 4.9 42.7 1.0
CA D:LEU240 4.9 39.6 1.0

Reference:

H.Chen, Y.Wang, W.Li. The Structure of Sb-1-202/Sb-2-204-Tubulin Complex To Be Published.
Page generated: Sat Dec 12 12:55:18 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy