Chlorine in PDB 6ejj: Structure of A Glycosyltransferase / State 2

The structure of Structure of A Glycosyltransferase / State 2, PDB code: 6ejj was solved by A.S.Ramirez, J.Boilevin, A.R.Mehdipour, G.Hummer, T.Darbre, J.L.Reymond, K.P.Locher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.81 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	60.510, 125.780, 71.010, 90.00, 90.28, 90.00
R / Rfree (%)	20.6 / 24.4

The structure of Structure of A Glycosyltransferase / State 2 also contains other interesting chemical elements:

Sodium

(Na)

4 atoms

The binding sites of Chlorine atom in the Structure of A Glycosyltransferase / State 2 (pdb code 6ejj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of A Glycosyltransferase / State 2, PDB code: 6ejj:

Chlorine binding site 1 out of 1 in the Structure of A Glycosyltransferase / State 2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Glycosyltransferase / State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:82.4 occ:1.00 NA A:NA403 3.2 58.4 1.0 CB A:HIS118 3.5 57.8 1.0 N A:ALA17 3.7 45.5 1.0 O A:HIS118 3.7 59.3 1.0 ND1 A:HIS118 3.9 64.7 1.0 O3B A:UDP401 3.9 46.1 1.0 CG A:HIS118 4.0 63.3 1.0 C A:GLY16 4.0 43.9 1.0 O3A A:UDP401 4.0 45.3 1.0 O4 A:A2G406 4.1 46.8 1.0 C A:HIS118 4.2 52.2 1.0 CA A:GLY16 4.2 37.1 1.0 CA A:ALA17 4.3 38.6 1.0 CA A:HIS118 4.4 51.8 1.0 PB A:UDP401 4.5 46.5 1.0 CB A:ALA17 4.5 35.4 1.0 O A:GLY16 4.6 37.2 1.0 O1B A:UDP401 4.7 47.1 1.0 CD1 A:LEU146 4.7 56.5 1.0 C4 A:A2G406 4.8 48.2 1.0 CE1 A:HIS118 5.0 67.5 1.0 ND2 A:ASN166 5.0 50.1 1.0

A.S.Ramirez, J.Boilevin, A.R.Mehdipour, G.Hummer, T.Darbre, J.L.Reymond, K.P.Locher. Structural Basis of the Molecular Ruler Mechanism of A Bacterial Glycosyltransferase. Nat Commun V. 9 445 2018.
ISSN: ESSN 2041-1723
PubMed: 29386647
DOI: 10.1038/S41467-018-02880-2