Chlorine in PDB 6eqd: Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength

Enzymatic activity of Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength

All present enzymatic activity of Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength:
3.1.1.101;

Protein crystallography data

The structure of Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength, PDB code: 6eqd was solved by H.P.Austin, M.D.Allen, C.W.Johnson, G.T.Beckham, J.E.Mcgeehan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.33 / 1.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.556, 234.311, 164.529, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 20.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength (pdb code 6eqd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength, PDB code: 6eqd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6eqd

Go back to Chlorine Binding Sites List in 6eqd
Chlorine binding site 1 out of 2 in the Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:60.1
occ:1.00
N B:ASN288 4.1 26.4 1.0
CA B:ALA287 4.5 28.4 1.0
O B:HOH429 4.6 42.5 1.0
O B:HOH539 4.7 37.5 1.0
ND2 B:ASN288 4.7 33.3 1.0
CB B:ALA287 4.8 31.8 1.0
C B:ALA287 4.9 27.5 1.0
CA B:ASN288 4.9 27.2 1.0

Chlorine binding site 2 out of 2 in 6eqd

Go back to Chlorine Binding Sites List in 6eqd
Chlorine binding site 2 out of 2 in the Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Polyethylene Terephthalate Degrading Hydrolase From Ideonella Sakaiensis Collected at Long Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:63.1
occ:1.00
O C:HOH412 2.3 56.3 1.0
O C:HOH639 2.4 65.9 1.0
O C:HOH610 2.8 54.9 1.0
O C:HOH555 3.4 42.8 1.0
CE2 C:TYR32 3.8 41.4 1.0
OH C:TYR32 3.9 44.6 1.0
ND2 C:ASN264 4.0 39.9 1.0
CZ C:TYR32 4.2 42.7 1.0
CE C:LYS177 4.4 48.3 1.0
O C:HOH481 4.4 47.4 1.0
CD C:ARG153 4.5 38.0 1.0
CG C:ARG153 4.7 38.6 1.0
CD2 C:TYR32 4.8 39.7 1.0

Reference:

H.P.Austin, M.D.Allen, B.S.Donohoe, N.A.Rorrer, F.L.Kearns, R.L.Silveira, B.C.Pollard, G.Dominick, R.Duman, K.El Omari, V.Mykhaylyk, A.Wagner, W.E.Michener, A.Amore, M.S.Skaf, M.F.Crowley, A.W.Thorne, C.W.Johnson, H.L.Woodcock, J.E.Mcgeehan, G.T.Beckham. Characterization and Engineering of A Plastic-Degrading Aromatic Polyesterase. Proc. Natl. Acad. Sci. V. 115 E4350 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29666242
DOI: 10.1073/PNAS.1718804115
Page generated: Sat Dec 12 12:56:02 2020

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