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Chlorine in PDB 6f0u: Glic Mutant E35A

Protein crystallography data

The structure of Glic Mutant E35A, PDB code: 6f0u was solved by H.D.Hu, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.14 / 2.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 180.840, 133.060, 158.390, 90.00, 101.53, 90.00
R / Rfree (%) 21.8 / 23.3

Other elements in 6f0u:

The structure of Glic Mutant E35A also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glic Mutant E35A (pdb code 6f0u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Glic Mutant E35A, PDB code: 6f0u:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 6f0u

Go back to Chlorine Binding Sites List in 6f0u
Chlorine binding site 1 out of 7 in the Glic Mutant E35A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glic Mutant E35A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:64.8
occ:1.00
 NH1 A:ARG85 3.3 62.1 1.0
N A:PHE78 3.4 53.6 1.0
N A:ARG85 3.5 59.4 1.0
CD2 A:PHE78 3.8 63.5 1.0
CD A:ARG85 3.9 61.5 1.0
CA A:ARG77 3.9 51.5 1.0
CG A:ARG85 3.9 61.9 1.0
CB A:ARG85 4.0 53.9 1.0
C A:ARG77 4.1 54.5 1.0
CB A:ARG77 4.1 47.7 1.0
CB A:PHE78 4.1 56.6 1.0
CA A:ALA84 4.1 59.6 1.0
CA A:PHE78 4.3 54.0 1.0
CG2 A:VAL81 4.3 53.1 1.0
C A:ALA84 4.3 64.9 1.0
CA A:ARG85 4.4 57.9 1.0
CG A:PHE78 4.4 60.0 1.0
CZ A:ARG85 4.4 70.7 1.0
CG A:ARG77 4.5 53.6 1.0
O A:PHE78 4.5 54.4 1.0
NE A:ARG85 4.6 64.7 1.0
O A:ILE76 4.8 59.4 1.0
CE2 A:PHE78 4.8 67.3 1.0
CB A:ALA84 4.8 60.5 1.0
C A:PHE78 4.9 56.7 1.0

Chlorine binding site 2 out of 7 in 6f0u

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Chlorine binding site 2 out of 7 in the Glic Mutant E35A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Glic Mutant E35A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:74.5
occ:1.00
 N A:LEU180 3.3 59.4 1.0
ND2 A:ASN139 3.3 0.7 1.0
OD1 A:ASN139 3.5 89.8 1.0
CB A:LEU180 3.7 62.7 1.0
CG A:ASN139 3.8 97.3 1.0
CA A:ARG179 3.9 58.9 1.0
C A:ARG179 4.1 60.8 1.0
CA A:LEU180 4.1 60.1 1.0
CB A:SER134 4.1 57.8 1.0
CD A:ARG179 4.5 79.5 1.0
O A:ASP178 4.6 63.2 1.0
OG A:SER134 4.6 60.9 1.0
CB A:ARG179 4.6 55.6 1.0
N A:ARG179 4.9 60.1 1.0
CG A:ARG179 4.9 67.2 1.0

Chlorine binding site 3 out of 7 in 6f0u

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Chlorine binding site 3 out of 7 in the Glic Mutant E35A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Glic Mutant E35A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:76.8
occ:1.00
 N A:ALA175 3.7 54.9 1.0
CA A:PHE174 4.2 54.8 1.0
CB A:ALA175 4.2 56.4 1.0
C A:PHE174 4.4 57.0 1.0
O A:HOH534 4.4 74.3 1.0
CB A:PHE174 4.6 56.5 1.0
CA A:ALA175 4.6 54.6 1.0

Chlorine binding site 4 out of 7 in 6f0u

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Chlorine binding site 4 out of 7 in the Glic Mutant E35A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Glic Mutant E35A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:60.6
occ:1.00
 N B:PHE78 3.3 53.3 1.0
NH1 B:ARG85 3.3 53.1 1.0
CD2 B:PHE78 3.5 61.9 1.0
N B:ARG85 3.5 60.3 1.0
CD B:ARG85 3.7 52.6 1.0
CG B:ARG85 3.8 58.7 1.0
CB B:ARG85 3.9 55.0 1.0
CA B:ARG77 3.9 51.1 1.0
CB B:PHE78 3.9 54.9 1.0
C B:ARG77 4.1 53.2 1.0
CG B:PHE78 4.2 57.0 1.0
CA B:PHE78 4.2 53.3 1.0
CB B:ARG77 4.3 46.9 1.0
CG2 B:VAL81 4.3 49.0 1.0
CA B:ALA84 4.3 63.8 1.0
CA B:ARG85 4.3 58.9 1.0
CZ B:ARG85 4.3 60.8 1.0
C B:ALA84 4.4 65.9 1.0
O B:PHE78 4.5 59.4 1.0
NE B:ARG85 4.5 54.5 1.0
CE2 B:PHE78 4.5 65.4 1.0
CG B:ARG77 4.6 56.4 1.0
O B:ILE76 4.8 60.0 1.0
C B:PHE78 4.9 58.4 1.0

Chlorine binding site 5 out of 7 in 6f0u

Go back to Chlorine Binding Sites List in 6f0u
Chlorine binding site 5 out of 7 in the Glic Mutant E35A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Glic Mutant E35A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:63.8
occ:1.00
 N C:ARG85 3.4 65.3 1.0
N C:PHE78 3.5 59.6 1.0
NH1 C:ARG85 3.6 56.5 1.0
CD2 C:PHE78 3.8 67.4 1.0
CB C:ARG85 4.0 59.6 1.0
CA C:ALA84 4.0 67.3 1.0
CD C:ARG85 4.0 66.2 1.0
CA C:ARG77 4.0 59.2 1.0
CG C:ARG85 4.0 61.4 1.0
CB C:PHE78 4.1 60.8 1.0
CG2 C:VAL81 4.1 55.3 1.0
C C:ARG77 4.2 62.2 1.0
CB C:ARG77 4.2 58.9 1.0
C C:ALA84 4.2 70.1 1.0
CA C:PHE78 4.3 59.0 1.0
CA C:ARG85 4.3 63.4 1.0
CG C:PHE78 4.4 63.7 1.0
O C:PHE78 4.5 61.5 1.0
CG C:ARG77 4.5 70.5 1.0
CB C:ALA84 4.6 68.6 1.0
CZ C:ARG85 4.6 65.8 1.0
NE C:ARG85 4.8 63.3 1.0
CE2 C:PHE78 4.8 70.7 1.0
C C:PHE78 4.9 61.4 1.0
O C:ASN83 4.9 70.7 1.0
O C:ILE76 4.9 64.9 1.0

Chlorine binding site 6 out of 7 in 6f0u

Go back to Chlorine Binding Sites List in 6f0u
Chlorine binding site 6 out of 7 in the Glic Mutant E35A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Glic Mutant E35A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl405

b:55.8
occ:1.00
 O D:HOH533 2.9 52.1 1.0
NH1 D:ARG85 3.2 53.8 1.0
N D:PHE78 3.3 54.7 1.0
N D:ARG85 3.5 60.1 1.0
CD2 D:PHE78 3.6 62.0 1.0
CD D:ARG85 3.8 59.3 1.0
CG D:ARG85 3.8 54.9 1.0
CB D:ARG85 3.9 54.0 1.0
CA D:ARG77 3.9 52.6 1.0
CB D:PHE78 4.0 56.5 1.0
C D:ARG77 4.1 55.4 1.0
CA D:PHE78 4.2 54.8 1.0
CA D:ALA84 4.2 59.1 1.0
CG D:PHE78 4.2 58.5 1.0
CB D:ARG77 4.2 50.1 1.0
CZ D:ARG85 4.3 64.5 1.0
CA D:ARG85 4.3 58.9 1.0
C D:ALA84 4.4 64.9 1.0
CG2 D:VAL81 4.4 54.0 1.0
NE D:ARG85 4.5 55.6 1.0
CE2 D:PHE78 4.5 65.5 1.0
O D:PHE78 4.5 60.4 1.0
CG D:ARG77 4.6 44.3 1.0
O D:ILE76 4.7 57.8 1.0
CB D:ALA84 4.8 60.1 1.0
C D:PHE78 4.9 59.2 1.0

Chlorine binding site 7 out of 7 in 6f0u

Go back to Chlorine Binding Sites List in 6f0u
Chlorine binding site 7 out of 7 in the Glic Mutant E35A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Glic Mutant E35A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl404

b:69.1
occ:1.00
 N E:ARG85 3.4 61.5 1.0
NH1 E:ARG85 3.4 59.1 1.0
N E:PHE78 3.5 56.9 1.0
CD2 E:PHE78 3.8 62.8 1.0
CD E:ARG85 3.9 57.0 1.0
CG E:ARG85 3.9 58.8 1.0
CB E:ARG85 3.9 56.7 1.0
CA E:ARG77 4.0 56.9 1.0
CA E:ALA84 4.1 64.5 1.0
CB E:PHE78 4.2 57.6 1.0
C E:ALA84 4.2 66.5 1.0
C E:ARG77 4.2 59.8 1.0
CB E:ARG77 4.3 55.3 1.0
CA E:ARG85 4.3 59.6 1.0
CG2 E:VAL81 4.3 55.3 1.0
CA E:PHE78 4.4 56.5 1.0
CG E:PHE78 4.4 59.2 1.0
CZ E:ARG85 4.5 66.0 1.0
CG E:ARG77 4.5 65.7 1.0
O E:PHE78 4.6 62.1 1.0
NE E:ARG85 4.6 54.8 1.0
CB E:ALA84 4.7 65.4 1.0
CE2 E:PHE78 4.7 65.8 1.0
O E:ILE76 4.9 64.6 1.0
O E:ASN83 5.0 70.7 1.0

Reference:

A.Nemecz, H.Hu, Z.Fourati, C.Van Renterghem, M.Delarue, P.J.Corringer. Full Mutational Mapping of Titratable Residues Helps to Identify Proton-Sensors Involved in the Control of Channel Gating in the Gloeobacter Violaceus Pentameric Ligand-Gated Ion Channel. Plos Biol. V. 15 04470 2017.
ISSN: ESSN 1545-7885
PubMed: 29281623
DOI: 10.1371/JOURNAL.PBIO.2004470
Page generated: Sat Jul 27 22:47:05 2024

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