Chlorine in PDB 6f5c: Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Protein crystallography data
The structure of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl, PDB code: 6f5c
was solved by
B.Shaanan,
N.Kutnowski,
H.Shmuely,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.16 /
1.55
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
40.824,
71.350,
41.879,
90.00,
110.75,
90.00
|
R / Rfree (%)
|
17.9 /
20.4
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
29;
Binding sites:
The binding sites of Chlorine atom in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
(pdb code 6f5c). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 29 binding sites of Chlorine where determined in the
Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl, PDB code: 6f5c:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 1 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:49.8
occ:1.00
|
H
|
A:LEU34
|
2.2
|
27.1
|
1.0
|
HG23
|
A:THR75
|
2.6
|
60.9
|
1.0
|
HB3
|
A:TYR32
|
2.8
|
35.8
|
1.0
|
O
|
A:HOH375
|
2.8
|
23.3
|
1.0
|
H
|
A:GLY33
|
3.0
|
28.5
|
1.0
|
N
|
A:LEU34
|
3.1
|
22.6
|
1.0
|
HA
|
A:THR75
|
3.2
|
69.2
|
1.0
|
HB2
|
A:LEU34
|
3.3
|
32.2
|
1.0
|
N
|
A:GLY33
|
3.3
|
23.7
|
1.0
|
HB3
|
A:LEU34
|
3.4
|
32.2
|
1.0
|
HH
|
A:TYR54
|
3.6
|
45.4
|
1.0
|
HA3
|
A:GLY33
|
3.6
|
22.2
|
1.0
|
CG2
|
A:THR75
|
3.6
|
50.7
|
1.0
|
CB
|
A:LEU34
|
3.7
|
26.8
|
1.0
|
CB
|
A:TYR32
|
3.7
|
29.8
|
1.0
|
H
|
A:ASN76
|
3.7
|
49.0
|
1.0
|
HB2
|
A:TYR32
|
3.8
|
35.8
|
1.0
|
CA
|
A:GLY33
|
3.8
|
18.5
|
1.0
|
C
|
A:GLY33
|
3.9
|
16.5
|
1.0
|
CA
|
A:LEU34
|
4.0
|
22.1
|
1.0
|
O
|
A:HOH364
|
4.0
|
43.9
|
1.0
|
HG21
|
A:THR75
|
4.0
|
60.9
|
1.0
|
CA
|
A:THR75
|
4.1
|
57.6
|
1.0
|
C
|
A:TYR32
|
4.1
|
19.8
|
1.0
|
HG22
|
A:THR75
|
4.1
|
60.9
|
1.0
|
OH
|
A:TYR54
|
4.2
|
37.8
|
1.0
|
CB
|
A:THR75
|
4.2
|
59.5
|
1.0
|
OG1
|
A:THR75
|
4.3
|
68.5
|
1.0
|
O
|
A:ARG74
|
4.3
|
83.2
|
1.0
|
O
|
A:ASN76
|
4.3
|
43.9
|
1.0
|
N
|
A:ASN76
|
4.4
|
40.8
|
1.0
|
CA
|
A:TYR32
|
4.4
|
26.1
|
1.0
|
HA
|
A:TYR32
|
4.5
|
31.4
|
1.0
|
HA
|
A:LEU34
|
4.5
|
26.6
|
1.0
|
H
|
A:ALA35
|
4.5
|
26.2
|
1.0
|
HG1
|
A:THR75
|
4.6
|
82.3
|
1.0
|
CG
|
A:TYR32
|
4.7
|
37.0
|
1.0
|
HA2
|
A:GLY33
|
4.7
|
22.2
|
1.0
|
C
|
A:THR75
|
4.8
|
52.9
|
1.0
|
O
|
A:HOH330
|
4.8
|
37.2
|
1.0
|
O
|
A:TYR32
|
4.9
|
21.3
|
1.0
|
|
Chlorine binding site 2 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 2 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:33.8
occ:0.61
|
HH12
|
A:ARG38
|
2.1
|
64.5
|
1.0
|
HD23
|
A:LEU34
|
2.7
|
40.8
|
1.0
|
NH1
|
A:ARG38
|
2.9
|
53.7
|
1.0
|
O
|
A:HOH382
|
3.0
|
41.9
|
1.0
|
HB3
|
A:LEU34
|
3.0
|
32.2
|
1.0
|
HD2
|
A:TYR32
|
3.2
|
58.6
|
1.0
|
HH22
|
A:ARG38
|
3.2
|
47.3
|
1.0
|
HH11
|
A:ARG38
|
3.4
|
64.5
|
1.0
|
HG
|
A:LEU34
|
3.6
|
36.3
|
1.0
|
CD2
|
A:LEU34
|
3.6
|
34.0
|
1.0
|
HB2
|
A:ALA35
|
3.7
|
24.5
|
1.0
|
NH2
|
A:ARG38
|
3.8
|
39.4
|
1.0
|
CZ
|
A:ARG38
|
3.8
|
34.8
|
1.0
|
CB
|
A:LEU34
|
3.9
|
26.8
|
1.0
|
CG
|
A:LEU34
|
3.9
|
30.2
|
1.0
|
HB2
|
A:TYR32
|
3.9
|
35.8
|
1.0
|
H
|
A:ALA35
|
4.0
|
26.2
|
1.0
|
HD21
|
A:LEU34
|
4.1
|
40.8
|
1.0
|
CD2
|
A:TYR32
|
4.1
|
48.8
|
1.0
|
HD22
|
A:LEU34
|
4.2
|
40.8
|
1.0
|
N
|
A:ALA35
|
4.2
|
21.8
|
1.0
|
HB2
|
A:LEU34
|
4.5
|
32.2
|
1.0
|
CB
|
A:ALA35
|
4.5
|
20.4
|
1.0
|
HA
|
A:ALA35
|
4.6
|
28.9
|
1.0
|
HH21
|
A:ARG38
|
4.6
|
47.3
|
1.0
|
C
|
A:LEU34
|
4.6
|
24.5
|
1.0
|
CB
|
A:TYR32
|
4.7
|
29.8
|
1.0
|
CA
|
A:ALA35
|
4.7
|
24.0
|
1.0
|
HE2
|
A:TYR32
|
4.8
|
68.9
|
1.0
|
CA
|
A:LEU34
|
4.8
|
22.1
|
1.0
|
HB3
|
A:TYR32
|
4.8
|
35.8
|
1.0
|
CG
|
A:TYR32
|
4.9
|
37.0
|
1.0
|
CE2
|
A:TYR32
|
4.9
|
57.4
|
1.0
|
HB3
|
A:ALA35
|
5.0
|
24.5
|
1.0
|
H
|
A:LEU34
|
5.0
|
27.1
|
1.0
|
|
Chlorine binding site 3 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 3 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:31.9
occ:0.91
|
H
|
A:PHE18
|
2.4
|
23.9
|
1.0
|
HB3
|
A:ALA17
|
2.9
|
29.2
|
1.0
|
HB
|
A:THR16
|
2.9
|
23.3
|
1.0
|
HB2
|
A:PHE18
|
3.0
|
22.2
|
1.0
|
O
|
A:HOH325
|
3.1
|
21.8
|
1.0
|
N
|
A:PHE18
|
3.2
|
19.9
|
1.0
|
HH21
|
A:ARG52
|
3.2
|
62.2
|
1.0
|
HH22
|
A:ARG52
|
3.3
|
62.2
|
1.0
|
H
|
A:ALA17
|
3.3
|
22.8
|
1.0
|
CL
|
A:CL208
|
3.3
|
26.4
|
0.7
|
NH2
|
A:ARG52
|
3.6
|
51.8
|
1.0
|
HB3
|
A:PHE18
|
3.6
|
22.2
|
1.0
|
N
|
A:ALA17
|
3.6
|
19.0
|
1.0
|
CB
|
A:PHE18
|
3.6
|
18.4
|
1.0
|
CB
|
A:ALA17
|
3.8
|
24.3
|
1.0
|
CB
|
A:THR16
|
3.9
|
19.4
|
1.0
|
O
|
A:HOH377
|
4.0
|
58.2
|
1.0
|
CA
|
A:ALA17
|
4.0
|
20.4
|
1.0
|
CA
|
A:PHE18
|
4.0
|
19.9
|
1.0
|
C
|
A:ALA17
|
4.0
|
19.1
|
1.0
|
HG1
|
A:THR16
|
4.1
|
22.9
|
1.0
|
HB2
|
A:ALA17
|
4.2
|
29.2
|
1.0
|
OG1
|
A:THR16
|
4.2
|
19.0
|
1.0
|
O
|
A:HOH372
|
4.2
|
43.0
|
1.0
|
HA
|
B:THR16
|
4.3
|
19.4
|
1.0
|
C
|
A:THR16
|
4.4
|
16.1
|
1.0
|
HB1
|
A:ALA17
|
4.4
|
29.2
|
1.0
|
HA
|
A:PHE18
|
4.4
|
23.9
|
1.0
|
CA
|
A:THR16
|
4.6
|
19.6
|
1.0
|
HA
|
A:THR16
|
4.7
|
23.6
|
1.0
|
HG21
|
A:THR16
|
4.7
|
29.0
|
1.0
|
CG2
|
A:THR16
|
4.8
|
24.1
|
1.0
|
H
|
B:ALA17
|
4.8
|
22.9
|
1.0
|
O
|
A:HOH310
|
4.8
|
31.8
|
1.0
|
CZ
|
A:ARG52
|
4.8
|
39.6
|
1.0
|
H
|
A:GLN19
|
4.9
|
20.4
|
1.0
|
HA
|
A:ALA17
|
4.9
|
24.6
|
1.0
|
CG
|
A:PHE18
|
5.0
|
18.1
|
1.0
|
HG22
|
A:THR16
|
5.0
|
29.0
|
1.0
|
|
Chlorine binding site 4 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 4 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl204
b:41.4
occ:0.56
|
HG1
|
A:THR95
|
2.3
|
37.0
|
1.0
|
HA
|
A:LEU92
|
2.8
|
23.7
|
1.0
|
OG1
|
A:THR95
|
3.0
|
30.8
|
1.0
|
HB3
|
A:ASP91
|
3.2
|
26.9
|
1.0
|
HG21
|
B:THR95
|
3.2
|
53.7
|
1.0
|
O
|
A:ASP91
|
3.2
|
25.5
|
1.0
|
CL
|
B:CL201
|
3.3
|
47.9
|
0.6
|
HB
|
A:THR95
|
3.3
|
31.4
|
1.0
|
O
|
A:HOH342
|
3.3
|
28.1
|
1.0
|
C
|
A:ASP91
|
3.5
|
26.9
|
1.0
|
N
|
A:LEU92
|
3.6
|
22.2
|
1.0
|
CA
|
A:LEU92
|
3.6
|
19.7
|
1.0
|
HG1
|
B:THR95
|
3.6
|
27.7
|
1.0
|
CB
|
A:THR95
|
3.7
|
26.1
|
1.0
|
HG21
|
A:THR95
|
3.8
|
38.4
|
1.0
|
CB
|
A:ASP91
|
4.0
|
22.4
|
1.0
|
H
|
A:LEU92
|
4.1
|
26.7
|
1.0
|
HD13
|
A:LEU92
|
4.1
|
29.9
|
1.0
|
CG2
|
B:THR95
|
4.1
|
44.7
|
1.0
|
O
|
A:HOH391
|
4.1
|
43.6
|
1.0
|
HB2
|
A:LEU92
|
4.1
|
21.8
|
1.0
|
HD12
|
A:LEU92
|
4.2
|
29.9
|
1.0
|
CG2
|
A:THR95
|
4.3
|
32.0
|
1.0
|
HB2
|
A:ASP91
|
4.3
|
26.9
|
1.0
|
CA
|
A:ASP91
|
4.4
|
24.6
|
1.0
|
OG1
|
B:THR95
|
4.4
|
23.0
|
1.0
|
HG22
|
B:THR95
|
4.4
|
53.7
|
1.0
|
H
|
A:THR95
|
4.4
|
23.8
|
1.0
|
CB
|
A:LEU92
|
4.4
|
18.1
|
1.0
|
CD1
|
A:LEU92
|
4.6
|
24.9
|
1.0
|
O
|
A:HOH303
|
4.7
|
41.8
|
1.0
|
HG23
|
B:THR95
|
4.7
|
53.7
|
1.0
|
CB
|
B:THR95
|
4.7
|
22.4
|
1.0
|
C
|
A:LEU92
|
4.7
|
18.2
|
1.0
|
HB
|
B:THR95
|
4.8
|
26.9
|
1.0
|
HG22
|
A:THR95
|
4.8
|
38.4
|
1.0
|
HA
|
A:ASP91
|
4.8
|
29.6
|
1.0
|
HG23
|
A:THR95
|
4.9
|
38.4
|
1.0
|
O
|
A:LEU92
|
4.9
|
19.5
|
1.0
|
CA
|
A:THR95
|
5.0
|
19.4
|
1.0
|
|
Chlorine binding site 5 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 5 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:39.3
occ:0.56
|
H
|
A:ASP104
|
2.4
|
25.5
|
1.0
|
HB2
|
A:ASP102
|
2.8
|
29.3
|
1.0
|
OD2
|
A:ASP104
|
3.0
|
61.8
|
1.0
|
H
|
A:ALA103
|
3.0
|
26.4
|
1.0
|
HB3
|
A:ALA103
|
3.1
|
37.2
|
1.0
|
CG
|
A:ASP104
|
3.2
|
48.0
|
1.0
|
N
|
A:ASP104
|
3.2
|
21.2
|
1.0
|
O
|
A:HOH366
|
3.4
|
33.3
|
1.0
|
N
|
A:ALA103
|
3.5
|
21.9
|
1.0
|
HB2
|
A:ASP104
|
3.5
|
36.5
|
1.0
|
CG
|
A:ASP102
|
3.6
|
25.0
|
1.0
|
CB
|
A:ASP102
|
3.6
|
24.4
|
1.0
|
OD1
|
A:ASP102
|
3.6
|
26.3
|
1.0
|
OD1
|
A:ASP104
|
3.6
|
42.3
|
1.0
|
CB
|
A:ASP104
|
3.8
|
30.4
|
1.0
|
CB
|
A:ALA103
|
3.9
|
31.0
|
1.0
|
CA
|
A:ALA103
|
4.0
|
19.1
|
1.0
|
C
|
A:ALA103
|
4.1
|
20.4
|
1.0
|
CA
|
A:ASP104
|
4.1
|
23.9
|
1.0
|
OD2
|
A:ASP102
|
4.1
|
36.0
|
1.0
|
HB3
|
A:ASP102
|
4.2
|
29.3
|
1.0
|
C
|
A:ASP102
|
4.3
|
17.6
|
1.0
|
HB2
|
A:ALA103
|
4.4
|
37.2
|
1.0
|
CA
|
A:ASP102
|
4.5
|
20.8
|
1.0
|
HA
|
A:ASP104
|
4.6
|
28.8
|
1.0
|
HB1
|
A:ALA103
|
4.6
|
37.2
|
1.0
|
HB3
|
A:ASP104
|
4.7
|
36.5
|
1.0
|
H
|
A:ARG105
|
4.8
|
24.0
|
1.0
|
O
|
A:HOH341
|
4.9
|
42.0
|
1.0
|
HA
|
A:ASP102
|
4.9
|
25.0
|
1.0
|
HA
|
A:ALA103
|
4.9
|
23.0
|
1.0
|
|
Chlorine binding site 6 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 6 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl206
b:41.2
occ:0.83
|
HE
|
A:ARG108
|
2.2
|
37.0
|
1.0
|
O
|
A:HOH363
|
2.6
|
30.8
|
1.0
|
HD3
|
A:ARG105
|
2.7
|
22.6
|
1.0
|
HH21
|
A:ARG108
|
2.8
|
37.0
|
1.0
|
NE
|
A:ARG108
|
3.1
|
30.8
|
1.0
|
HA
|
A:ARG105
|
3.1
|
24.3
|
1.0
|
HZ
|
B:PHE85
|
3.3
|
26.5
|
1.0
|
HB2
|
A:ARG108
|
3.4
|
23.7
|
1.0
|
NH2
|
A:ARG108
|
3.5
|
30.7
|
1.0
|
CD
|
A:ARG105
|
3.6
|
18.8
|
1.0
|
HB3
|
A:ASP104
|
3.7
|
36.5
|
1.0
|
HE
|
A:ARG105
|
3.7
|
26.4
|
1.0
|
O
|
A:ASP104
|
3.7
|
21.1
|
1.0
|
CZ
|
A:ARG108
|
3.8
|
29.0
|
1.0
|
C
|
A:ASP104
|
3.9
|
20.4
|
1.0
|
O
|
A:HOH359
|
3.9
|
52.8
|
1.0
|
HG2
|
A:ARG105
|
3.9
|
23.7
|
1.0
|
CA
|
A:ARG105
|
3.9
|
20.2
|
1.0
|
N
|
A:ARG105
|
3.9
|
19.9
|
1.0
|
HB3
|
A:ARG108
|
4.0
|
23.7
|
1.0
|
HD2
|
A:ARG108
|
4.0
|
33.4
|
1.0
|
NE
|
A:ARG105
|
4.1
|
22.0
|
1.0
|
CB
|
A:ARG108
|
4.1
|
19.7
|
1.0
|
CD
|
A:ARG108
|
4.1
|
27.8
|
1.0
|
HB2
|
A:ASP104
|
4.2
|
36.5
|
1.0
|
CZ
|
B:PHE85
|
4.2
|
22.0
|
1.0
|
CG
|
A:ARG105
|
4.2
|
19.7
|
1.0
|
HD2
|
A:ARG105
|
4.3
|
22.6
|
1.0
|
HH22
|
A:ARG108
|
4.3
|
37.0
|
1.0
|
CB
|
A:ASP104
|
4.3
|
30.4
|
1.0
|
O
|
A:HOH341
|
4.3
|
42.0
|
1.0
|
H
|
A:ARG105
|
4.4
|
24.0
|
1.0
|
HZ
|
A:PHE99
|
4.5
|
26.4
|
1.0
|
CB
|
A:ARG105
|
4.6
|
19.3
|
1.0
|
CG
|
A:ARG108
|
4.7
|
22.4
|
1.0
|
CA
|
A:ASP104
|
4.7
|
23.9
|
1.0
|
H
|
A:ARG108
|
4.8
|
21.1
|
1.0
|
HE1
|
B:PHE85
|
4.8
|
31.7
|
1.0
|
HE2
|
B:PHE85
|
4.9
|
44.9
|
1.0
|
O
|
A:HOH392
|
4.9
|
49.7
|
1.0
|
HD3
|
A:ARG108
|
4.9
|
33.4
|
1.0
|
CE1
|
B:PHE85
|
5.0
|
26.4
|
1.0
|
CE2
|
B:PHE85
|
5.0
|
37.4
|
1.0
|
HG3
|
A:ARG108
|
5.0
|
26.9
|
1.0
|
|
Chlorine binding site 7 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 7 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl207
b:48.9
occ:0.58
|
CL
|
A:CL207
|
0.0
|
48.9
|
0.6
|
CL
|
A:CL207
|
2.0
|
32.1
|
0.4
|
HH11
|
A:ARG31
|
2.2
|
49.1
|
0.6
|
HH12
|
A:ARG31
|
2.7
|
49.1
|
0.6
|
NH1
|
A:ARG31
|
2.7
|
40.9
|
0.6
|
HG2
|
A:ARG31
|
3.2
|
52.6
|
0.6
|
HB1
|
A:ALA35
|
3.3
|
24.5
|
1.0
|
HG2
|
A:ARG31
|
3.4
|
48.2
|
0.4
|
HB2
|
A:ALA35
|
3.5
|
24.5
|
1.0
|
O
|
A:HOH382
|
3.5
|
41.9
|
1.0
|
HB3
|
A:ALA35
|
3.7
|
24.5
|
1.0
|
HE
|
A:ARG31
|
3.7
|
49.6
|
0.4
|
HA
|
A:ARG31
|
3.7
|
29.5
|
0.4
|
HD3
|
A:ARG31
|
3.7
|
52.8
|
0.6
|
CB
|
A:ALA35
|
3.7
|
20.4
|
1.0
|
HB3
|
A:ARG31
|
3.8
|
34.5
|
0.4
|
HB3
|
A:ARG31
|
3.9
|
34.1
|
0.6
|
CG
|
A:ARG31
|
3.9
|
43.8
|
0.6
|
CZ
|
A:ARG31
|
4.0
|
46.9
|
0.6
|
H
|
A:TYR32
|
4.0
|
35.8
|
1.0
|
CG
|
A:ARG31
|
4.2
|
40.1
|
0.4
|
CD
|
A:ARG31
|
4.2
|
43.9
|
0.6
|
CB
|
A:ARG31
|
4.2
|
28.4
|
0.6
|
CB
|
A:ARG31
|
4.3
|
28.7
|
0.4
|
NE
|
A:ARG31
|
4.3
|
41.3
|
0.4
|
CA
|
A:ARG31
|
4.4
|
23.2
|
0.6
|
CA
|
A:ARG31
|
4.4
|
24.5
|
0.4
|
HH22
|
A:ARG38
|
4.5
|
47.3
|
1.0
|
NE
|
A:ARG31
|
4.5
|
33.6
|
0.6
|
HH21
|
A:ARG38
|
4.6
|
47.3
|
1.0
|
HD3
|
A:ARG31
|
4.6
|
39.3
|
0.4
|
O
|
A:ALA30
|
4.6
|
28.8
|
1.0
|
CD
|
A:ARG31
|
4.6
|
32.7
|
0.4
|
N
|
A:TYR32
|
4.7
|
29.8
|
1.0
|
HG3
|
A:ARG31
|
4.7
|
52.6
|
0.6
|
NH2
|
A:ARG38
|
4.8
|
39.4
|
1.0
|
HH22
|
A:ARG31
|
4.9
|
74.5
|
0.6
|
NH2
|
A:ARG31
|
4.9
|
62.0
|
0.6
|
HG3
|
A:GLU29
|
5.0
|
40.2
|
1.0
|
HD2
|
A:TYR32
|
5.0
|
58.6
|
1.0
|
HG3
|
A:ARG31
|
5.0
|
48.2
|
0.4
|
|
Chlorine binding site 8 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 8 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl207
b:32.1
occ:0.42
|
CL
|
A:CL207
|
0.0
|
32.1
|
0.4
|
CL
|
A:CL207
|
2.0
|
48.9
|
0.6
|
H
|
A:TYR32
|
2.2
|
35.8
|
1.0
|
HA
|
A:ARG31
|
2.7
|
29.5
|
0.4
|
N
|
A:TYR32
|
3.0
|
29.8
|
1.0
|
HB3
|
A:ALA35
|
3.1
|
24.5
|
1.0
|
O
|
A:HOH382
|
3.1
|
41.9
|
1.0
|
HB2
|
A:ALA35
|
3.2
|
24.5
|
1.0
|
HB3
|
A:ARG31
|
3.3
|
34.5
|
0.4
|
HB3
|
A:ARG31
|
3.4
|
34.1
|
0.6
|
CD2
|
A:TYR32
|
3.4
|
48.8
|
1.0
|
CB
|
A:ALA35
|
3.5
|
20.4
|
1.0
|
HD2
|
A:TYR32
|
3.5
|
58.6
|
1.0
|
CA
|
A:ARG31
|
3.5
|
23.2
|
0.6
|
CA
|
A:ARG31
|
3.5
|
24.5
|
0.4
|
CG
|
A:TYR32
|
3.6
|
37.0
|
1.0
|
HB1
|
A:ALA35
|
3.6
|
24.5
|
1.0
|
HB2
|
A:TYR32
|
3.6
|
35.8
|
1.0
|
HG2
|
A:ARG31
|
3.6
|
52.6
|
0.6
|
HH11
|
A:ARG31
|
3.7
|
49.1
|
0.6
|
C
|
A:ARG31
|
3.8
|
29.8
|
1.0
|
CB
|
A:ARG31
|
3.8
|
28.4
|
0.6
|
CB
|
A:ARG31
|
3.8
|
28.7
|
0.4
|
CB
|
A:TYR32
|
3.9
|
29.8
|
1.0
|
HG2
|
A:ARG31
|
3.9
|
48.2
|
0.4
|
CE2
|
A:TYR32
|
3.9
|
57.4
|
1.0
|
CA
|
A:TYR32
|
4.0
|
26.1
|
1.0
|
CD1
|
A:TYR32
|
4.1
|
40.2
|
1.0
|
CG
|
A:ARG31
|
4.2
|
43.8
|
0.6
|
HE2
|
A:TYR32
|
4.3
|
68.9
|
1.0
|
HD3
|
A:ARG31
|
4.3
|
52.8
|
0.6
|
NH1
|
A:ARG31
|
4.4
|
40.9
|
0.6
|
CG
|
A:ARG31
|
4.4
|
40.1
|
0.4
|
CZ
|
A:TYR32
|
4.5
|
50.5
|
1.0
|
O
|
A:ALA30
|
4.5
|
28.8
|
1.0
|
CE1
|
A:TYR32
|
4.6
|
36.0
|
1.0
|
HH12
|
A:ARG31
|
4.6
|
49.1
|
0.6
|
HD1
|
A:TYR32
|
4.6
|
48.3
|
1.0
|
HB2
|
A:ARG31
|
4.7
|
34.5
|
0.4
|
O
|
A:TYR32
|
4.7
|
21.3
|
1.0
|
HA
|
A:TYR32
|
4.7
|
31.4
|
1.0
|
HB2
|
A:ARG31
|
4.7
|
34.1
|
0.6
|
N
|
A:ARG31
|
4.7
|
22.7
|
1.0
|
H
|
A:ALA35
|
4.8
|
26.2
|
1.0
|
HH22
|
A:ARG38
|
4.8
|
47.3
|
1.0
|
CD
|
A:ARG31
|
4.8
|
43.9
|
0.6
|
HB3
|
A:TYR32
|
4.8
|
35.8
|
1.0
|
C
|
A:TYR32
|
4.9
|
19.8
|
1.0
|
CA
|
A:ALA35
|
4.9
|
24.0
|
1.0
|
HE
|
A:ARG31
|
4.9
|
49.6
|
0.4
|
O
|
A:ARG31
|
5.0
|
24.2
|
1.0
|
HD3
|
A:ARG31
|
5.0
|
39.3
|
0.4
|
|
Chlorine binding site 9 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 9 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl208
b:26.4
occ:0.69
|
H
|
B:ALA17
|
2.2
|
22.9
|
1.0
|
H
|
A:ALA17
|
2.2
|
22.8
|
1.0
|
O
|
B:HOH377
|
2.9
|
19.9
|
0.2
|
HA
|
B:THR16
|
3.0
|
19.4
|
1.0
|
HA
|
A:THR16
|
3.0
|
23.6
|
1.0
|
N
|
B:ALA17
|
3.0
|
19.4
|
1.0
|
HB
|
A:THR16
|
3.0
|
23.3
|
1.0
|
N
|
A:ALA17
|
3.1
|
19.0
|
1.0
|
HB
|
B:THR16
|
3.1
|
21.3
|
1.0
|
CL
|
A:CL203
|
3.3
|
31.9
|
0.9
|
HB2
|
B:ALA17
|
3.4
|
25.7
|
1.0
|
HB3
|
B:ALA17
|
3.5
|
25.7
|
1.0
|
HB3
|
A:ALA17
|
3.5
|
29.2
|
1.0
|
HB2
|
A:ALA17
|
3.5
|
29.2
|
1.0
|
O
|
B:HOH377
|
3.5
|
15.4
|
0.8
|
CA
|
A:THR16
|
3.6
|
19.6
|
1.0
|
CA
|
B:THR16
|
3.6
|
16.1
|
1.0
|
CB
|
A:THR16
|
3.7
|
19.4
|
1.0
|
CB
|
B:ALA17
|
3.8
|
21.4
|
1.0
|
CB
|
B:THR16
|
3.8
|
17.7
|
1.0
|
C
|
B:THR16
|
3.8
|
15.1
|
1.0
|
C
|
A:THR16
|
3.8
|
16.1
|
1.0
|
CB
|
A:ALA17
|
3.9
|
24.3
|
1.0
|
HG22
|
A:THR16
|
3.9
|
29.0
|
1.0
|
HG22
|
B:THR16
|
4.0
|
29.3
|
1.0
|
CA
|
B:ALA17
|
4.0
|
18.5
|
1.0
|
CA
|
A:ALA17
|
4.1
|
20.4
|
1.0
|
CG2
|
A:THR16
|
4.3
|
24.1
|
1.0
|
H
|
A:PHE18
|
4.3
|
23.9
|
1.0
|
H
|
B:PHE18
|
4.4
|
19.3
|
1.0
|
CG2
|
B:THR16
|
4.4
|
24.4
|
1.0
|
HA
|
B:ALA17
|
4.6
|
22.2
|
1.0
|
HA
|
A:ALA17
|
4.7
|
24.6
|
1.0
|
HG21
|
A:THR16
|
4.7
|
29.0
|
1.0
|
HB1
|
B:ALA17
|
4.7
|
25.7
|
1.0
|
HB1
|
A:ALA17
|
4.8
|
29.2
|
1.0
|
HG21
|
B:THR16
|
4.8
|
29.3
|
1.0
|
OG1
|
A:THR16
|
4.9
|
19.0
|
1.0
|
N
|
B:THR16
|
4.9
|
19.4
|
1.0
|
N
|
A:THR16
|
4.9
|
20.0
|
1.0
|
N
|
A:PHE18
|
5.0
|
19.9
|
1.0
|
OG1
|
B:THR16
|
5.0
|
19.1
|
1.0
|
O
|
B:LEU15
|
5.0
|
19.6
|
1.0
|
|
Chlorine binding site 10 out
of 29 in 6f5c
Go back to
Chlorine Binding Sites List in 6f5c
Chlorine binding site 10 out
of 29 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Structure of H. Salinarum Rosr (VNG0258) Grown From Nacl within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl209
b:60.8
occ:0.73
|
O
|
A:HOH331
|
2.5
|
31.5
|
1.0
|
HA
|
A:TRP94
|
2.8
|
22.4
|
1.0
|
HB2
|
A:TRP94
|
3.1
|
21.9
|
1.0
|
HD1
|
A:TRP94
|
3.1
|
28.9
|
1.0
|
CA
|
A:TRP94
|
3.4
|
18.6
|
1.0
|
N
|
A:TRP94
|
3.6
|
22.1
|
1.0
|
HH22
|
A:ARG13
|
3.6
|
47.8
|
1.0
|
CB
|
A:TRP94
|
3.7
|
18.2
|
1.0
|
HB3
|
A:GLU93
|
3.8
|
25.8
|
1.0
|
H
|
A:TRP94
|
3.8
|
26.5
|
1.0
|
CD1
|
A:TRP94
|
3.9
|
24.0
|
1.0
|
C
|
A:GLU93
|
3.9
|
17.1
|
1.0
|
O
|
A:GLU93
|
4.1
|
20.1
|
1.0
|
HB2
|
A:GLU93
|
4.1
|
25.8
|
1.0
|
HB3
|
A:SER97
|
4.1
|
27.3
|
0.6
|
NH2
|
A:ARG13
|
4.1
|
39.8
|
1.0
|
HH21
|
A:ARG13
|
4.2
|
47.8
|
1.0
|
CG
|
A:TRP94
|
4.2
|
22.4
|
1.0
|
HB2
|
A:SER97
|
4.3
|
25.4
|
0.5
|
HB3
|
A:SER97
|
4.3
|
25.4
|
0.5
|
CB
|
A:GLU93
|
4.4
|
21.5
|
1.0
|
HG
|
A:SER97
|
4.5
|
24.9
|
0.6
|
OG
|
A:SER97
|
4.5
|
20.7
|
0.6
|
HB3
|
A:TRP94
|
4.5
|
21.9
|
1.0
|
CL
|
A:CL212
|
4.5
|
43.3
|
0.5
|
O
|
A:ASP90
|
4.5
|
21.4
|
1.0
|
CB
|
A:SER97
|
4.7
|
22.7
|
0.6
|
CB
|
A:SER97
|
4.7
|
21.1
|
0.5
|
C
|
A:TRP94
|
4.8
|
21.2
|
1.0
|
CA
|
A:GLU93
|
4.8
|
17.4
|
1.0
|
|
Reference:
N.Kutnowski,
H.Shmuely,
I.Dahan,
F.Shmulevich,
G.Davidov,
A.Shahar,
J.Eichler,
R.Zarivach,
B.Shaanan.
The 3-D Structure of VNG0258H/Rosr - A Haloarchaeal Dna-Binding Protein in Its Ionic Shell. J. Struct. Biol. V. 204 191 2018.
ISSN: ESSN 1095-8657
PubMed: 30110657
DOI: 10.1016/J.JSB.2018.08.008
Page generated: Sat Jul 27 23:01:52 2024
|