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Chlorine in PDB 6f9h: Crystal Structure of Barley Beta-Amylase Complexed with 4-S-Alpha-D- Glucopyranosyl-(1,4-Dideoxy-4-Thio-Nojirimycin)

Enzymatic activity of Crystal Structure of Barley Beta-Amylase Complexed with 4-S-Alpha-D- Glucopyranosyl-(1,4-Dideoxy-4-Thio-Nojirimycin)

All present enzymatic activity of Crystal Structure of Barley Beta-Amylase Complexed with 4-S-Alpha-D- Glucopyranosyl-(1,4-Dideoxy-4-Thio-Nojirimycin):
3.2.1.2;

Protein crystallography data

The structure of Crystal Structure of Barley Beta-Amylase Complexed with 4-S-Alpha-D- Glucopyranosyl-(1,4-Dideoxy-4-Thio-Nojirimycin), PDB code: 6f9h was solved by M.A.Moncayo, L.L.Rodrigues, C.E.M.Stevenson, C.Ruzanski, M.Rejzek, D.M.Lawson, J.Angulo, R.A.Field, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.05 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.520, 99.110, 65.040, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 20.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Barley Beta-Amylase Complexed with 4-S-Alpha-D- Glucopyranosyl-(1,4-Dideoxy-4-Thio-Nojirimycin) (pdb code 6f9h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Barley Beta-Amylase Complexed with 4-S-Alpha-D- Glucopyranosyl-(1,4-Dideoxy-4-Thio-Nojirimycin), PDB code: 6f9h:

Chlorine binding site 1 out of 1 in 6f9h

Go back to Chlorine Binding Sites List in 6f9h
Chlorine binding site 1 out of 1 in the Crystal Structure of Barley Beta-Amylase Complexed with 4-S-Alpha-D- Glucopyranosyl-(1,4-Dideoxy-4-Thio-Nojirimycin)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Barley Beta-Amylase Complexed with 4-S-Alpha-D- Glucopyranosyl-(1,4-Dideoxy-4-Thio-Nojirimycin) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl603

b:40.6
occ:0.50
 NH2 A:ARG324 3.2 35.6 1.0
NH1 A:ARG324 3.2 35.5 1.0
O A:HOH894 3.4 55.3 1.0
CZ A:ARG324 3.7 34.9 1.0
CD1 A:LEU475 3.8 34.6 1.0
O A:HOH926 3.9 43.6 1.0
O A:HOH763 4.7 41.9 1.0
CG A:LEU475 4.9 34.7 1.0
NE A:ARG324 5.0 32.9 1.0

Reference:

M.A.Moncayo, L.L.Rodrigues, C.E.M.Stevenson, C.Ruzanski, M.Rejzek, D.M.Lawson, J.Angulo, R.A.Field. Synthesis, Biological and Structural Analysis of Prospective Glycosyl-Iminosugar Prodrugs: Impact on Germination To Be Published.
Page generated: Sat Jul 27 23:03:57 2024

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