Chlorine in PDB 6f9o: Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5

All present enzymatic activity of Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5:
3.8.1.5;

The structure of Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5, PDB code: 6f9o was solved by K.Tratsiak, T.Prudnikova, I.Drienovska, J.Damborsky, J.Brynda, P.Pachl, M.Kuty, R.Chaloupkova, I.Kuta Smatanova, P.Rezacova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.05
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.332, 79.451, 43.489, 90.00, 94.98, 90.00
R / Rfree (%)	11 / 13.2

The structure of Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5 also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5 (pdb code 6f9o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5, PDB code: 6f9o:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:7.8 occ:1.00 O A:HOH610 3.1 14.0 1.0 NE1 A:TRP164 3.3 11.5 1.0 NE1 A:TRP124 3.3 4.4 1.0 CA A:PRO213 3.5 5.1 1.0 CD1 A:TRP124 3.7 4.5 1.0 CG A:PRO213 3.7 5.6 1.0 CG A:GLU55 3.7 4.5 1.0 N A:PRO213 3.7 4.6 1.0 CB A:PRO213 3.9 5.8 1.0 CB A:GLU55 4.0 4.1 1.0 C A:PHE212 4.0 4.5 1.0 O A:HOH550 4.1 27.6 1.0 CD A:PRO213 4.1 5.0 1.0 CG2 A:VAL216 4.1 5.8 1.0 CD1 A:TRP164 4.2 11.5 1.0 O A:PHE212 4.2 4.9 1.0 CE1 A:PHE161 4.3 14.4 1.0 CE2 A:TRP164 4.3 10.6 1.0 CB A:PHE212 4.4 4.8 1.0 CE2 A:TRP124 4.6 4.1 1.0 CD A:GLU55 4.6 4.4 1.0 CZ2 A:TRP164 4.6 9.6 1.0 O A:HOH907 4.6 18.5 0.7 OD2 A:ASP123 4.7 5.2 0.4 C A:PRO213 4.7 5.3 1.0 OD1 A:ASP123 4.8 9.9 0.4 OE2 A:GLU55 4.8 5.1 1.0 OD2 A:ASP123 4.8 4.3 0.6 CZ A:PHE161 4.9 14.3 1.0 CA A:PHE212 4.9 4.9 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl402 b:7.8 occ:1.00 O A:HOH958 3.2 11.9 1.0 O A:HOH779 3.3 7.8 1.0 N A:GLY178 3.3 5.8 1.0 ND2 A:ASN197 3.4 6.4 1.0 CA A:GLY177 3.6 5.6 1.0 N A:GLY177 3.7 5.6 1.0 C A:GLY177 3.8 5.5 1.0 CB A:HIS175 4.0 5.5 1.0 OD1 A:ASN197 4.1 5.8 1.0 CG A:ASN197 4.2 4.9 1.0 CA A:GLY178 4.3 6.0 1.0 C A:HIS175 4.5 5.0 1.0 CA A:HIS175 4.5 5.1 1.0 CG A:HIS175 4.6 5.5 1.0 CG2 A:ILE193 4.6 6.8 1.0 N A:VAL176 4.7 4.8 1.0 C A:VAL176 4.8 4.8 1.0 O A:GLY177 4.8 6.2 1.0 O A:HOH818 4.9 7.2 1.0 O A:HIS175 4.9 5.8 1.0

K.Tratsiak, T.Prudnikova, I.Drienovska, J.Damborsky, J.Brynda, P.Pachl, M.Kuty, R.Chaloupkova, P.Rezacova, I.Kuta Smatanova. Crystal Structure of the Cold-Adapted Haloalkane Dehalogenase Dpca From Psychrobacter Cryohalolentis K5. Acta Crystallogr.,Sect.F V. 75 324 2019.
ISSN: ESSN 2053-230X
PubMed: 31045561
DOI: 10.1107/S2053230X19002796