Chlorine in PDB 6fdy: Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib
Enzymatic activity of Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib
All present enzymatic activity of Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib:
2.7.11.1;
Protein crystallography data
The structure of Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib, PDB code: 6fdy
was solved by
S.Mathea,
E.Salah,
M.Moroglu,
A.Scorah,
T.Krojer,
F.Von Delft,
C.H.Arrowsmith,
A.M.Edwards,
C.Bountra,
K.Huber,
S.Knapp,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.18 /
1.70
|
Space group
|
C 2 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
92.375,
169.406,
45.919,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.5 /
23.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib
(pdb code 6fdy). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib, PDB code: 6fdy:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6fdy
Go back to
Chlorine Binding Sites List in 6fdy
Chlorine binding site 1 out
of 4 in the Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Cl301
b:22.5
occ:1.00
|
CL1
|
U:DB8301
|
0.0
|
22.5
|
1.0
|
CAY
|
U:DB8301
|
1.8
|
17.6
|
1.0
|
CAI
|
U:DB8301
|
2.7
|
18.4
|
1.0
|
CAX
|
U:DB8301
|
2.7
|
19.8
|
1.0
|
O02
|
U:DB8301
|
2.9
|
19.0
|
1.0
|
O
|
U:HOH519
|
3.3
|
23.9
|
1.0
|
O
|
U:HOH484
|
3.3
|
31.1
|
1.0
|
CG
|
U:ASP157
|
3.5
|
21.2
|
1.0
|
CB
|
U:ASP157
|
3.7
|
17.5
|
1.0
|
CA
|
U:ASP157
|
3.7
|
16.4
|
1.0
|
OD1
|
U:ASP157
|
3.8
|
17.8
|
1.0
|
OD2
|
U:ASP157
|
3.8
|
21.9
|
1.0
|
O
|
U:HOH485
|
3.8
|
21.1
|
1.0
|
CAZ
|
U:DB8301
|
4.0
|
17.9
|
1.0
|
CAJ
|
U:DB8301
|
4.0
|
16.3
|
1.0
|
N
|
U:ASP157
|
4.1
|
14.3
|
1.0
|
CD
|
U:LYS44
|
4.1
|
25.3
|
1.0
|
NZ
|
U:LYS44
|
4.1
|
35.4
|
1.0
|
C01
|
U:DB8301
|
4.4
|
20.4
|
1.0
|
CBB
|
U:DB8301
|
4.5
|
16.1
|
1.0
|
O
|
U:HOH489
|
4.7
|
30.6
|
1.0
|
CE
|
U:LYS44
|
4.7
|
29.1
|
1.0
|
O
|
U:HOH514
|
4.9
|
30.1
|
1.0
|
C
|
U:ASP157
|
4.9
|
16.7
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6fdy
Go back to
Chlorine Binding Sites List in 6fdy
Chlorine binding site 2 out
of 4 in the Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Cl301
b:18.9
occ:1.00
|
CL2
|
U:DB8301
|
0.0
|
18.9
|
1.0
|
CAZ
|
U:DB8301
|
1.8
|
17.9
|
1.0
|
CAI
|
U:DB8301
|
2.7
|
18.4
|
1.0
|
CBB
|
U:DB8301
|
2.8
|
16.1
|
1.0
|
NAU
|
U:DB8301
|
3.1
|
14.8
|
1.0
|
CAG
|
U:DB8301
|
3.4
|
15.9
|
1.0
|
CBE
|
U:DB8301
|
3.6
|
14.8
|
1.0
|
O
|
U:ALA42
|
3.6
|
20.2
|
1.0
|
CBA
|
U:DB8301
|
3.7
|
15.8
|
1.0
|
NAD
|
U:DB8301
|
3.7
|
16.8
|
1.0
|
CB
|
U:ALA42
|
3.7
|
17.8
|
1.0
|
CG
|
U:MET91
|
3.8
|
16.9
|
1.0
|
CG1
|
U:VAL28
|
3.9
|
19.3
|
1.0
|
CB
|
U:LYS44
|
3.9
|
20.7
|
1.0
|
C
|
U:ALA42
|
4.0
|
18.4
|
1.0
|
N
|
U:LYS44
|
4.0
|
18.9
|
1.0
|
CAY
|
U:DB8301
|
4.0
|
17.6
|
1.0
|
CAJ
|
U:DB8301
|
4.0
|
16.3
|
1.0
|
CB
|
U:MET91
|
4.2
|
18.3
|
1.0
|
C
|
U:ILE43
|
4.4
|
19.2
|
1.0
|
CA
|
U:LYS44
|
4.4
|
20.2
|
1.0
|
N
|
U:ILE43
|
4.4
|
18.3
|
1.0
|
CA
|
U:ALA42
|
4.5
|
16.2
|
1.0
|
CAX
|
U:DB8301
|
4.5
|
19.8
|
1.0
|
CG2
|
U:VAL28
|
4.6
|
23.6
|
1.0
|
CBG
|
U:DB8301
|
4.6
|
15.4
|
1.0
|
O
|
U:LEU89
|
4.7
|
21.3
|
1.0
|
CAH
|
U:DB8301
|
4.7
|
15.5
|
1.0
|
CA
|
U:ILE43
|
4.7
|
16.8
|
1.0
|
CB
|
U:VAL28
|
4.9
|
19.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6fdy
Go back to
Chlorine Binding Sites List in 6fdy
Chlorine binding site 3 out
of 4 in the Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Cl302
b:24.8
occ:1.00
|
CL1
|
U:DB8302
|
0.0
|
24.8
|
1.0
|
CAY
|
U:DB8302
|
1.8
|
22.5
|
1.0
|
CAI
|
U:DB8302
|
2.7
|
19.0
|
1.0
|
CAX
|
U:DB8302
|
2.7
|
23.1
|
1.0
|
O02
|
U:DB8302
|
2.9
|
25.7
|
1.0
|
CE
|
U:MET180
|
3.4
|
20.9
|
1.0
|
SD
|
U:MET180
|
3.4
|
20.4
|
1.0
|
CA
|
U:PRO177
|
3.9
|
17.5
|
1.0
|
CG2
|
U:VAL185
|
4.0
|
29.9
|
1.0
|
CAZ
|
U:DB8302
|
4.0
|
18.9
|
1.0
|
CAJ
|
U:DB8302
|
4.0
|
19.5
|
1.0
|
CB
|
U:PRO177
|
4.2
|
20.0
|
1.0
|
C01
|
U:DB8302
|
4.3
|
27.2
|
1.0
|
CD1
|
U:ILE225
|
4.4
|
17.1
|
1.0
|
CG
|
U:PRO177
|
4.5
|
21.7
|
1.0
|
O
|
U:PRO177
|
4.5
|
18.1
|
1.0
|
CBB
|
U:DB8302
|
4.6
|
20.1
|
1.0
|
CB
|
U:MET180
|
4.6
|
17.1
|
1.0
|
CG
|
U:MET180
|
4.7
|
18.0
|
1.0
|
N
|
U:PRO177
|
4.7
|
15.7
|
1.0
|
C
|
U:PRO177
|
4.7
|
17.0
|
1.0
|
NAD
|
U:DB8302
|
4.9
|
26.5
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6fdy
Go back to
Chlorine Binding Sites List in 6fdy
Chlorine binding site 4 out
of 4 in the Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Cl302
b:22.8
occ:1.00
|
CL2
|
U:DB8302
|
0.0
|
22.8
|
1.0
|
CAZ
|
U:DB8302
|
1.7
|
18.9
|
1.0
|
CAI
|
U:DB8302
|
2.7
|
19.0
|
1.0
|
CBB
|
U:DB8302
|
2.7
|
20.1
|
1.0
|
NAU
|
U:DB8302
|
3.0
|
19.9
|
1.0
|
O
|
U:PHE218
|
3.2
|
19.6
|
1.0
|
CBE
|
U:DB8302
|
3.4
|
21.9
|
1.0
|
N
|
U:GLU222
|
3.6
|
20.1
|
1.0
|
CAG
|
U:DB8302
|
3.6
|
24.8
|
1.0
|
CBA
|
U:DB8302
|
3.7
|
21.2
|
1.0
|
CD2
|
U:LEU221
|
3.7
|
22.3
|
1.0
|
CG
|
U:LEU221
|
3.7
|
18.7
|
1.0
|
CB
|
U:GLU222
|
3.8
|
19.9
|
1.0
|
CD1
|
U:PHE218
|
3.9
|
23.1
|
1.0
|
CA
|
U:GLU222
|
4.0
|
20.5
|
1.0
|
CAY
|
U:DB8302
|
4.0
|
22.5
|
1.0
|
CAJ
|
U:DB8302
|
4.0
|
19.5
|
1.0
|
NAD
|
U:DB8302
|
4.0
|
26.5
|
1.0
|
CB
|
U:LEU221
|
4.0
|
19.4
|
1.0
|
C
|
U:PHE218
|
4.0
|
22.5
|
1.0
|
CB
|
U:PHE218
|
4.2
|
22.8
|
1.0
|
CA
|
U:PHE218
|
4.3
|
22.0
|
1.0
|
CBG
|
U:DB8302
|
4.3
|
23.1
|
1.0
|
C
|
U:LEU221
|
4.3
|
19.2
|
1.0
|
CG
|
U:GLU222
|
4.3
|
21.4
|
1.0
|
CAX
|
U:DB8302
|
4.5
|
23.1
|
1.0
|
CG
|
U:PHE218
|
4.6
|
23.9
|
1.0
|
CD1
|
U:ILE225
|
4.7
|
17.1
|
1.0
|
CA
|
U:LEU221
|
4.7
|
18.6
|
1.0
|
CAL
|
U:DB8302
|
4.7
|
20.5
|
1.0
|
CAH
|
U:DB8302
|
4.8
|
23.3
|
1.0
|
OE1
|
U:GLU222
|
4.9
|
24.5
|
1.0
|
CE1
|
U:PHE218
|
5.0
|
25.4
|
1.0
|
O
|
U:LEU221
|
5.0
|
20.9
|
1.0
|
|
Reference:
S.Mathea,
E.Salah,
M.Moroglu,
A.Scorah,
F.Von Delft,
C.H.Arrowsmith,
A.M.Edwards,
C.Bountra,
K.Huber,
S.Knapp.
Unc-51-Like Kinase 3 (ULK3) in Complex with Bosutinib To Be Published.
Page generated: Sat Jul 27 23:12:16 2024
|