Chlorine in PDB 6fhy: Photorhabdus Asymbiotica Lectin (Phl) in Complex with Synthetic C- Fucoside

Protein crystallography data

The structure of Photorhabdus Asymbiotica Lectin (Phl) in Complex with Synthetic C- Fucoside, PDB code: 6fhy was solved by J.Houser, G.Jancarikova, M.Wimmerova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.56 / 1.86
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.346, 81.346, 222.783, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 21.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Photorhabdus Asymbiotica Lectin (Phl) in Complex with Synthetic C- Fucoside (pdb code 6fhy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Photorhabdus Asymbiotica Lectin (Phl) in Complex with Synthetic C- Fucoside, PDB code: 6fhy:

Chlorine binding site 1 out of 1 in 6fhy

Go back to Chlorine Binding Sites List in 6fhy
Chlorine binding site 1 out of 1 in the Photorhabdus Asymbiotica Lectin (Phl) in Complex with Synthetic C- Fucoside


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Photorhabdus Asymbiotica Lectin (Phl) in Complex with Synthetic C- Fucoside within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:36.8
occ:1.00
CG A:ASP280 3.3 19.5 1.0
OD1 A:ASP280 3.5 17.7 1.0
OD2 A:ASP280 3.5 20.4 1.0
NH2 A:ARG282 3.6 22.1 1.0
CB A:CYS279 3.7 22.4 1.0
N A:ASP280 3.7 19.2 1.0
CB A:ASP280 3.9 19.1 1.0
O A:HOH533 4.0 22.3 1.0
CB A:ASN278 4.1 19.3 1.0
N A:CYS279 4.1 21.1 1.0
CA A:CYS279 4.3 22.0 1.0
NE A:ARG282 4.4 20.7 1.0
CA A:ASP280 4.5 19.1 1.0
CZ A:ARG282 4.5 21.5 1.0
C A:CYS279 4.5 20.8 1.0
OD1 A:ASN278 4.7 18.8 1.0
CG A:ASN278 4.8 19.0 1.0
C A:ASN278 4.8 20.0 1.0

Reference:

G.Paulikova, J.Houser, M.Kasakova, B.Oroszova, B.Bertolotti, K.Parkan, J.Moravcova, M.Wimmerova. Fucosylated Inhibitors of Recently Identified Bangle Lectin From Photorhabdus Asymbiotica. Sci Rep V. 9 14904 2019.
ISSN: ESSN 2045-2322
PubMed: 31624296
DOI: 10.1038/S41598-019-51357-9
Page generated: Sat Dec 12 12:58:49 2020

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