Chlorine in PDB 6foz: The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13
Enzymatic activity of The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13
All present enzymatic activity of The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13:
1.14.13.9;
Protein crystallography data
The structure of The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13, PDB code: 6foz
was solved by
C.W.Levy,
D.Leys,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
66.89 /
2.15
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.540,
52.190,
136.210,
90.00,
103.53,
90.00
|
R / Rfree (%)
|
19.9 /
22.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13
(pdb code 6foz). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13, PDB code: 6foz:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6foz
Go back to
Chlorine Binding Sites List in 6foz
Chlorine binding site 1 out
of 4 in the The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:56.3
occ:1.00
|
CL1
|
A:E0H502
|
0.0
|
56.3
|
1.0
|
C11
|
A:E0H502
|
1.8
|
50.0
|
1.0
|
C13
|
A:E0H502
|
2.7
|
45.3
|
1.0
|
C10
|
A:E0H502
|
2.7
|
48.9
|
1.0
|
H101
|
A:E0H502
|
2.8
|
58.6
|
1.0
|
HZ
|
A:PHE237
|
2.8
|
42.1
|
1.0
|
H6
|
A:FAD501
|
3.0
|
36.3
|
1.0
|
CL2
|
A:E0H502
|
3.1
|
43.0
|
1.0
|
HB2
|
A:PRO317
|
3.2
|
37.3
|
1.0
|
HE2
|
A:PHE237
|
3.2
|
40.5
|
1.0
|
HM72
|
A:FAD501
|
3.4
|
42.8
|
1.0
|
C6
|
A:FAD501
|
3.5
|
30.2
|
1.0
|
CZ
|
A:PHE237
|
3.6
|
35.1
|
1.0
|
HG1
|
A:THR235
|
3.6
|
47.5
|
1.0
|
HG21
|
A:THR235
|
3.7
|
43.8
|
1.0
|
CE2
|
A:PHE237
|
3.8
|
33.8
|
1.0
|
HB
|
A:THR235
|
3.9
|
46.0
|
1.0
|
HG2
|
A:PRO317
|
3.9
|
42.6
|
1.0
|
C15
|
A:E0H502
|
4.0
|
46.5
|
1.0
|
CB
|
A:PRO317
|
4.0
|
31.1
|
1.0
|
C09
|
A:E0H502
|
4.1
|
44.9
|
1.0
|
HD12
|
A:ILE223
|
4.1
|
60.6
|
1.0
|
C5X
|
A:FAD501
|
4.2
|
28.7
|
1.0
|
C7M
|
A:FAD501
|
4.2
|
35.7
|
1.0
|
N5
|
A:FAD501
|
4.2
|
25.8
|
1.0
|
C7
|
A:FAD501
|
4.3
|
33.6
|
1.0
|
HG3
|
A:PRO317
|
4.3
|
42.6
|
1.0
|
CG
|
A:PRO317
|
4.3
|
35.5
|
1.0
|
OG1
|
A:THR235
|
4.3
|
39.6
|
1.0
|
CB
|
A:THR235
|
4.4
|
38.4
|
1.0
|
CG2
|
A:THR235
|
4.4
|
36.5
|
1.0
|
HB
|
A:ILE223
|
4.4
|
52.8
|
1.0
|
HB3
|
A:PRO317
|
4.4
|
37.3
|
1.0
|
O
|
A:HOH610
|
4.5
|
44.9
|
1.0
|
C08
|
A:E0H502
|
4.6
|
47.1
|
1.0
|
O
|
A:PRO317
|
4.6
|
39.2
|
1.0
|
HM73
|
A:FAD501
|
4.6
|
42.8
|
1.0
|
HD13
|
A:ILE223
|
4.7
|
60.6
|
1.0
|
H151
|
A:E0H502
|
4.7
|
55.8
|
1.0
|
HG22
|
A:THR235
|
4.8
|
43.8
|
1.0
|
H091
|
A:E0H502
|
4.8
|
53.9
|
1.0
|
CD1
|
A:ILE223
|
4.8
|
50.5
|
1.0
|
CE1
|
A:PHE237
|
4.8
|
37.4
|
1.0
|
HG21
|
A:ILE223
|
4.9
|
53.8
|
1.0
|
HM71
|
A:FAD501
|
4.9
|
42.8
|
1.0
|
O
|
A:HOH654
|
5.0
|
42.5
|
1.0
|
C
|
A:PRO317
|
5.0
|
37.6
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6foz
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Chlorine Binding Sites List in 6foz
Chlorine binding site 2 out
of 4 in the The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:43.0
occ:1.00
|
CL2
|
A:E0H502
|
0.0
|
43.0
|
1.0
|
C13
|
A:E0H502
|
1.8
|
45.3
|
1.0
|
HD12
|
A:ILE223
|
2.7
|
60.6
|
1.0
|
C11
|
A:E0H502
|
2.7
|
50.0
|
1.0
|
C15
|
A:E0H502
|
2.8
|
46.5
|
1.0
|
H151
|
A:E0H502
|
2.8
|
55.8
|
1.0
|
HA
|
A:PHE318
|
3.0
|
50.0
|
1.0
|
HD13
|
A:ILE223
|
3.1
|
60.6
|
1.0
|
CL1
|
A:E0H502
|
3.1
|
56.3
|
1.0
|
HE2
|
A:PHE237
|
3.1
|
40.5
|
1.0
|
CD1
|
A:ILE223
|
3.2
|
50.5
|
1.0
|
CD1
|
A:PHE318
|
3.4
|
47.4
|
1.0
|
HZ
|
A:PHE237
|
3.4
|
42.1
|
1.0
|
HD11
|
A:ILE223
|
3.4
|
60.6
|
1.0
|
HD1
|
A:PHE318
|
3.5
|
56.8
|
1.0
|
CE2
|
A:PHE237
|
3.5
|
33.8
|
1.0
|
CE1
|
A:PHE318
|
3.7
|
47.0
|
1.0
|
HG2
|
A:PRO317
|
3.7
|
42.6
|
1.0
|
CZ
|
A:PHE237
|
3.7
|
35.1
|
1.0
|
CA
|
A:PHE318
|
3.8
|
41.7
|
1.0
|
CG
|
A:PHE318
|
3.8
|
44.6
|
1.0
|
O
|
A:PRO317
|
3.8
|
39.2
|
1.0
|
HB2
|
A:PRO317
|
3.9
|
37.3
|
1.0
|
HE1
|
A:PHE318
|
3.9
|
56.4
|
1.0
|
N
|
A:PHE318
|
3.9
|
40.1
|
1.0
|
C
|
A:PRO317
|
4.0
|
37.6
|
1.0
|
C10
|
A:E0H502
|
4.0
|
48.9
|
1.0
|
C08
|
A:E0H502
|
4.1
|
47.1
|
1.0
|
CZ
|
A:PHE318
|
4.2
|
48.5
|
1.0
|
CB
|
A:PHE318
|
4.3
|
43.6
|
1.0
|
CD2
|
A:PHE318
|
4.3
|
48.4
|
1.0
|
H
|
A:PHE318
|
4.4
|
48.1
|
1.0
|
O
|
A:HOH633
|
4.4
|
45.0
|
1.0
|
CG
|
A:PRO317
|
4.5
|
35.5
|
1.0
|
CE2
|
A:PHE318
|
4.5
|
49.6
|
1.0
|
CD2
|
A:PHE237
|
4.5
|
35.1
|
1.0
|
CB
|
A:PRO317
|
4.5
|
31.1
|
1.0
|
C09
|
A:E0H502
|
4.6
|
44.9
|
1.0
|
HG21
|
A:ILE223
|
4.6
|
53.8
|
1.0
|
HB3
|
A:PHE318
|
4.6
|
52.3
|
1.0
|
CG1
|
A:ILE223
|
4.6
|
48.1
|
1.0
|
H
|
A:HIS319
|
4.7
|
50.3
|
1.0
|
HB
|
A:ILE223
|
4.7
|
52.8
|
1.0
|
H101
|
A:E0H502
|
4.7
|
58.6
|
1.0
|
HZ
|
A:PHE318
|
4.7
|
58.3
|
1.0
|
CE1
|
A:PHE237
|
4.8
|
37.4
|
1.0
|
HD2
|
A:PHE237
|
4.8
|
42.1
|
1.0
|
CA
|
A:PRO317
|
4.9
|
34.0
|
1.0
|
HD2
|
A:PHE318
|
4.9
|
58.0
|
1.0
|
C
|
A:PHE318
|
5.0
|
42.8
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6foz
Go back to
Chlorine Binding Sites List in 6foz
Chlorine binding site 3 out
of 4 in the The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:52.0
occ:1.00
|
CL1
|
B:E0H502
|
0.0
|
52.0
|
1.0
|
C11
|
B:E0H502
|
1.8
|
46.8
|
1.0
|
C13
|
B:E0H502
|
2.7
|
43.9
|
1.0
|
C10
|
B:E0H502
|
2.7
|
42.8
|
1.0
|
H101
|
B:E0H502
|
2.8
|
51.3
|
1.0
|
H6
|
B:FAD501
|
2.9
|
39.9
|
1.0
|
HB2
|
B:PRO317
|
3.0
|
43.0
|
1.0
|
HZ
|
B:PHE237
|
3.0
|
47.0
|
1.0
|
CL2
|
B:E0H502
|
3.1
|
42.9
|
1.0
|
HM72
|
B:FAD501
|
3.5
|
43.7
|
1.0
|
C6
|
B:FAD501
|
3.5
|
33.2
|
1.0
|
HE2
|
B:PHE237
|
3.7
|
45.1
|
1.0
|
HG1
|
B:THR235
|
3.7
|
48.9
|
1.0
|
HG21
|
B:THR235
|
3.7
|
41.3
|
1.0
|
CZ
|
B:PHE237
|
3.8
|
39.2
|
1.0
|
HG2
|
B:PRO317
|
3.9
|
46.4
|
1.0
|
CB
|
B:PRO317
|
3.9
|
35.8
|
1.0
|
O
|
B:HOH656
|
4.0
|
46.0
|
1.0
|
C15
|
B:E0H502
|
4.0
|
42.7
|
1.0
|
HB
|
B:THR235
|
4.0
|
44.8
|
1.0
|
C09
|
B:E0H502
|
4.1
|
43.3
|
1.0
|
N5
|
B:FAD501
|
4.1
|
28.5
|
1.0
|
C5X
|
B:FAD501
|
4.1
|
33.8
|
1.0
|
CE2
|
B:PHE237
|
4.2
|
37.6
|
1.0
|
CG
|
B:PRO317
|
4.2
|
38.7
|
1.0
|
HG3
|
B:PRO317
|
4.3
|
46.4
|
1.0
|
HB3
|
B:PRO317
|
4.3
|
43.0
|
1.0
|
C7M
|
B:FAD501
|
4.3
|
36.4
|
1.0
|
C7
|
B:FAD501
|
4.3
|
35.8
|
1.0
|
HD12
|
B:ILE223
|
4.3
|
57.8
|
1.0
|
OG1
|
B:THR235
|
4.4
|
40.7
|
1.0
|
O
|
B:PRO317
|
4.4
|
39.5
|
1.0
|
CG2
|
B:THR235
|
4.5
|
34.4
|
1.0
|
HB
|
B:ILE223
|
4.5
|
49.0
|
1.0
|
CB
|
B:THR235
|
4.5
|
37.4
|
1.0
|
C08
|
B:E0H502
|
4.6
|
41.7
|
1.0
|
HD13
|
B:ILE223
|
4.6
|
57.8
|
1.0
|
HM73
|
B:FAD501
|
4.7
|
43.7
|
1.0
|
H151
|
B:E0H502
|
4.7
|
51.2
|
1.0
|
H091
|
B:E0H502
|
4.8
|
51.9
|
1.0
|
HG21
|
B:ILE223
|
4.8
|
50.1
|
1.0
|
C
|
B:PRO317
|
4.8
|
38.7
|
1.0
|
HG22
|
B:THR235
|
4.8
|
41.3
|
1.0
|
O
|
B:HOH610
|
4.9
|
58.5
|
1.0
|
CD1
|
B:ILE223
|
5.0
|
48.1
|
1.0
|
HM71
|
B:FAD501
|
5.0
|
43.7
|
1.0
|
CA
|
B:PRO317
|
5.0
|
35.5
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6foz
Go back to
Chlorine Binding Sites List in 6foz
Chlorine binding site 4 out
of 4 in the The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of The Crystal Structure of P.Fluorescens Kynurenine 3-Monooxygenase (Kmo) in Complex with Competitive Inhibitor No. 13 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:42.9
occ:1.00
|
CL2
|
B:E0H502
|
0.0
|
42.9
|
1.0
|
C13
|
B:E0H502
|
1.8
|
43.9
|
1.0
|
HD12
|
B:ILE223
|
2.6
|
57.8
|
1.0
|
C11
|
B:E0H502
|
2.7
|
46.8
|
1.0
|
C15
|
B:E0H502
|
2.8
|
42.7
|
1.0
|
H151
|
B:E0H502
|
2.9
|
51.2
|
1.0
|
HD13
|
B:ILE223
|
2.9
|
57.8
|
1.0
|
HA
|
B:PHE318
|
3.0
|
54.0
|
1.0
|
HE2
|
B:PHE237
|
3.1
|
45.1
|
1.0
|
CD1
|
B:ILE223
|
3.1
|
48.1
|
1.0
|
CL1
|
B:E0H502
|
3.1
|
52.0
|
1.0
|
HZ
|
B:PHE237
|
3.3
|
47.0
|
1.0
|
HD11
|
B:ILE223
|
3.4
|
57.8
|
1.0
|
HD1
|
B:PHE318
|
3.4
|
58.5
|
1.0
|
CD1
|
B:PHE318
|
3.5
|
48.8
|
1.0
|
CE2
|
B:PHE237
|
3.5
|
37.6
|
1.0
|
CZ
|
B:PHE237
|
3.6
|
39.2
|
1.0
|
HG2
|
B:PRO317
|
3.7
|
46.4
|
1.0
|
O
|
B:PRO317
|
3.8
|
39.5
|
1.0
|
CA
|
B:PHE318
|
3.8
|
45.0
|
1.0
|
CE1
|
B:PHE318
|
3.9
|
48.8
|
1.0
|
HB2
|
B:PRO317
|
3.9
|
43.0
|
1.0
|
C
|
B:PRO317
|
4.0
|
38.7
|
1.0
|
HE1
|
B:PHE318
|
4.0
|
58.5
|
1.0
|
N
|
B:PHE318
|
4.0
|
41.7
|
1.0
|
C10
|
B:E0H502
|
4.0
|
42.8
|
1.0
|
CG
|
B:PHE318
|
4.0
|
47.9
|
1.0
|
C08
|
B:E0H502
|
4.1
|
41.7
|
1.0
|
HE3
|
B:MET221
|
4.2
|
80.0
|
1.0
|
O
|
B:HOH658
|
4.3
|
44.0
|
1.0
|
CB
|
B:PHE318
|
4.4
|
46.7
|
1.0
|
HG21
|
B:ILE223
|
4.4
|
50.1
|
1.0
|
HB
|
B:ILE223
|
4.4
|
49.0
|
1.0
|
CG1
|
B:ILE223
|
4.5
|
46.6
|
1.0
|
H
|
B:PHE318
|
4.5
|
50.0
|
1.0
|
C09
|
B:E0H502
|
4.6
|
43.3
|
1.0
|
CG
|
B:PRO317
|
4.6
|
38.7
|
1.0
|
HE1
|
B:MET221
|
4.6
|
80.0
|
1.0
|
CB
|
B:PRO317
|
4.6
|
35.8
|
1.0
|
CD2
|
B:PHE237
|
4.6
|
37.4
|
1.0
|
CZ
|
B:PHE318
|
4.6
|
50.2
|
1.0
|
HB3
|
B:PHE318
|
4.6
|
56.1
|
1.0
|
H
|
B:HIS319
|
4.6
|
61.3
|
1.0
|
CD2
|
B:PHE318
|
4.7
|
49.8
|
1.0
|
H101
|
B:E0H502
|
4.7
|
51.3
|
1.0
|
CE
|
B:MET221
|
4.7
|
66.7
|
1.0
|
CE1
|
B:PHE237
|
4.8
|
37.5
|
1.0
|
HG13
|
B:ILE223
|
4.8
|
55.9
|
1.0
|
HE2
|
B:MET221
|
4.9
|
80.0
|
1.0
|
CB
|
B:ILE223
|
4.9
|
40.8
|
1.0
|
HD2
|
B:PHE237
|
4.9
|
44.9
|
1.0
|
CA
|
B:PRO317
|
4.9
|
35.5
|
1.0
|
H
|
B:GLY320
|
5.0
|
47.6
|
1.0
|
C
|
B:PHE318
|
5.0
|
47.8
|
1.0
|
CE2
|
B:PHE318
|
5.0
|
52.0
|
1.0
|
|
Reference:
S.Zhang,
M.Sakuma,
G.S.Deora,
C.W.Levy,
A.Klausing,
C.Breda,
K.Read,
C.D.Edlin,
B.P.Ross,
M.W.Muelas,
P.J.Day,
S.O'hagan,
D.B.Kell,
R.Schwarcz,
D.Leys,
D.J.Heyes,
F.Giorgini,
N.S.Scrutton.
Neuroprotective Brain-Permeable Inhibitors of Kynurenine 3-Monooxygenase To Be Published.
Page generated: Sat Jul 27 23:24:47 2024
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