Atomistry » Chlorine » PDB 6fkv-6frm » 6fql
Atomistry »
  Chlorine »
    PDB 6fkv-6frm »
      6fql »

Chlorine in PDB 6fql: Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna

Enzymatic activity of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna

All present enzymatic activity of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna:
2.3.2.27;

Protein crystallography data

The structure of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna, PDB code: 6fql was solved by P.Kumari, F.Aeschimann, D.Gaidatzis, J.J.Keusch, P.Ghosh, A.Neagu, K.Pachulska-Wieczorek, J.M.Bujnicki, H.Gut, H.Grosshans, R.Ciosk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.30 / 2.35
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 101.490, 101.490, 108.940, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 21.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna (pdb code 6fql). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna, PDB code: 6fql:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 1 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl901

b:92.0
occ:1.00
 OE2 A:GLU555 2.9 96.2 1.0
CD A:GLU555 3.9 96.2 1.0
O A:HOH1037 4.1 60.3 1.0
ND2 A:ASN819 4.1 60.7 1.0
CG A:ARG564 4.2 57.1 1.0
O4 B:U6 4.5 91.0 1.0
OD1 A:ASN819 4.5 61.2 1.0
CG A:GLU555 4.5 90.5 1.0
CD A:ARG564 4.7 57.3 1.0
CG A:ASN819 4.7 62.4 1.0
SG A:CYS563 4.8 75.7 1.0
OE1 A:GLU555 4.8 0.6 1.0
C4 B:U6 5.0 88.5 1.0

Chlorine binding site 2 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 2 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:92.5
occ:0.50
 NZ A:LYS649 3.7 69.6 1.0
CA A:GLY650 4.0 58.7 1.0
N A:GLY650 4.4 57.6 1.0
C A:GLY650 4.6 56.3 1.0
CG A:LYS649 4.6 64.9 1.0
CG2 A:THR651 4.7 49.0 1.0
CE A:LYS649 4.9 68.4 1.0
CD A:LYS649 4.9 69.0 1.0
N A:THR651 4.9 56.1 1.0

Chlorine binding site 3 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 3 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:95.4
occ:1.00
 N A:ASN653 3.4 57.7 1.0
ND2 A:ASN653 3.8 57.9 1.0
CG A:ASN653 3.8 58.0 1.0
CA A:LYS652 3.8 60.3 1.0
CB A:LYS652 3.9 63.9 1.0
OD1 A:ASN653 4.1 56.8 1.0
CG A:LYS652 4.2 67.0 1.0
C A:LYS652 4.2 58.4 1.0
CB A:ASN653 4.3 60.5 1.0
CA A:ASN653 4.5 58.8 1.0

Chlorine binding site 4 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 4 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl904

b:91.7
occ:1.00
 NE2 A:HIS678 3.0 46.9 1.0
CD2 A:HIS678 3.8 47.5 1.0
CE2 A:TRP700 4.0 52.6 1.0
CE1 A:HIS678 4.0 46.1 1.0
NE1 A:TRP700 4.1 53.7 1.0
CZ2 A:TRP700 4.2 51.5 1.0
CD2 A:TRP700 4.3 52.4 1.0
CD1 A:TRP700 4.5 53.3 1.0
CG A:TRP700 4.6 51.7 1.0
CH2 A:TRP700 4.7 52.2 1.0
CE3 A:TRP700 4.8 49.9 1.0
CZ3 A:TRP700 5.0 51.2 1.0
CG A:HIS678 5.0 45.3 1.0

Chlorine binding site 5 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 5 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl905

b:91.9
occ:1.00
 NE2 A:HIS702 3.8 53.0 1.0
CE1 A:HIS702 3.9 53.0 1.0
CD2 A:HIS702 4.1 51.9 1.0
ND1 A:HIS702 4.3 52.8 1.0
CG A:HIS702 4.4 51.7 1.0
CL A:CL908 4.8 88.8 1.0
N A:HIS702 4.8 44.1 1.0
O A:LYS701 4.9 44.8 1.0
C A:LYS701 4.9 44.9 1.0
CB A:LYS701 4.9 54.0 1.0
CA A:HIS702 5.0 45.7 1.0

Chlorine binding site 6 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 6 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl906

b:0.0
occ:1.00
 O B:HOH112 3.1 71.5 1.0
NH2 A:ARG676 3.3 52.1 0.5
N7 B:A9 3.5 53.4 1.0
N6 B:A9 4.0 55.7 1.0
CZ A:ARG676 4.4 52.9 0.5
C5 B:A9 4.4 54.1 1.0
C8 B:A9 4.5 51.8 1.0
C6 B:A9 4.7 56.2 1.0
NH1 A:ARG676 4.8 52.3 0.5
N7 B:A8 5.0 59.1 1.0

Chlorine binding site 7 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 7 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl907

b:0.6
occ:1.00
 O B:HOH105 3.5 70.0 1.0
NE A:ARG564 3.6 57.2 1.0
NH2 A:ARG564 3.6 54.7 1.0
CZ A:PHE816 3.8 59.3 1.0
CZ A:ARG564 4.1 56.7 1.0
O B:HOH111 4.3 67.5 1.0
CE2 A:PHE816 4.4 60.7 1.0
O2' B:A8 4.5 52.3 1.0
O A:HOH1063 4.6 70.4 1.0
CD A:ARG564 4.7 57.3 1.0
CE1 A:PHE816 4.7 56.9 1.0
NH1 A:ARG799 4.8 59.6 1.0
O B:HOH108 5.0 63.9 1.0

Chlorine binding site 8 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 8 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl908

b:88.8
occ:1.00
 NE A:ARG726 3.4 44.5 1.0
ND2 A:ASN724 3.9 44.6 1.0
NH2 A:ARG726 4.0 47.8 1.0
CZ A:ARG726 4.1 45.3 1.0
CD A:ARG726 4.2 43.6 1.0
O A:HIS702 4.3 52.0 1.0
O A:HOH1012 4.3 51.9 1.0
CG A:ASN724 4.4 41.9 1.0
CA A:HIS702 4.5 45.7 1.0
CD2 A:HIS702 4.7 51.9 1.0
CB A:ASN724 4.8 39.1 1.0
CL A:CL905 4.8 91.9 1.0
C A:HIS702 4.8 49.0 1.0
CE1 A:PHE739 4.8 41.9 1.0
CD1 A:PHE739 4.9 42.2 1.0
O A:LYS701 5.0 44.8 1.0
OD1 A:ASN724 5.0 44.1 1.0

Reference:

P.Kumari, F.Aeschimann, D.Gaidatzis, J.J.Keusch, P.Ghosh, A.Neagu, K.Pachulska-Wieczorek, J.M.Bujnicki, H.Gut, H.Grosshans, R.Ciosk. Evolutionary Plasticity of the Nhl Domain Underlies Distinct Solutions to Rna Recognition. Nat Commun V. 9 1549 2018.
ISSN: ESSN 2041-1723
PubMed: 29674686
DOI: 10.1038/S41467-018-03920-7
Page generated: Sat Jul 27 23:28:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy