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Chlorine in PDB 6ftt: Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp

Enzymatic activity of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp

All present enzymatic activity of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp:
2.4.2.17;

Protein crystallography data

The structure of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp, PDB code: 6ftt was solved by M.S.Alphey, Y.Ge, G.Fisher, C.M.Czekster, J.H.Naismith, R.G.Da Silva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.70 / 2.29
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 93.770, 147.790, 98.940, 90.00, 103.05, 90.00
R / Rfree (%) 19.3 / 23.8

Other elements in 6ftt:

The structure of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp (pdb code 6ftt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp, PDB code: 6ftt:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 6ftt

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Chlorine binding site 1 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:57.5
occ:1.00
 NE2 A:GLN118 3.2 39.6 1.0
N A:ASP310 3.9 38.7 1.0
CB A:PRO116 4.0 38.6 1.0
C A:MET309 4.0 39.9 1.0
CG A:GLN118 4.1 39.0 1.0
CB A:GLN118 4.1 38.6 1.0
CD A:GLN118 4.1 39.7 1.0
CG A:PRO116 4.2 39.5 1.0
CB A:ASP310 4.2 38.3 1.0
CA A:ASP310 4.2 38.2 1.0
O A:MET309 4.2 41.7 1.0
CA A:GLN118 4.4 36.8 1.0
CA A:MET309 4.6 40.2 1.0
N A:MET309 4.8 39.5 1.0
OG A:SER308 4.9 41.2 1.0
N A:GLN118 5.0 36.9 1.0

Chlorine binding site 2 out of 12 in 6ftt

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Chlorine binding site 2 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl402

b:46.5
occ:1.00
 NE2 C:GLN118 3.2 37.8 1.0
N C:ASP310 3.8 35.2 1.0
CG C:GLN118 3.9 35.2 1.0
CB C:PRO116 3.9 33.0 1.0
C C:MET309 4.0 35.7 1.0
CB C:GLN118 4.0 33.8 1.0
CB C:ASP310 4.0 35.9 1.0
CD C:GLN118 4.0 35.7 1.0
CA C:ASP310 4.1 35.5 1.0
CG C:PRO116 4.1 33.5 1.0
O C:MET309 4.2 34.2 1.0
CA C:GLN118 4.3 32.7 1.0
CA C:MET309 4.6 37.0 1.0
N C:MET309 4.8 35.0 1.0
O C:HOH534 4.8 39.9 1.0
CG C:ASP310 4.9 37.5 1.0

Chlorine binding site 3 out of 12 in 6ftt

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Chlorine binding site 3 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:49.4
occ:1.00
 NE2 B:GLN118 3.2 38.1 1.0
N B:ASP310 3.7 35.7 1.0
C B:MET309 3.9 36.9 1.0
CG B:GLN118 3.9 36.4 1.0
CB B:GLN118 4.0 34.6 1.0
CB B:PRO116 4.0 34.9 1.0
CB B:ASP310 4.0 36.0 1.0
CA B:ASP310 4.0 35.5 1.0
CD B:GLN118 4.0 38.8 1.0
O B:MET309 4.1 37.6 1.0
CG B:PRO116 4.3 34.4 1.0
CA B:GLN118 4.3 33.5 1.0
CA B:MET309 4.5 36.2 1.0
N B:MET309 4.7 34.7 1.0
CG B:ASP310 4.9 38.0 1.0

Chlorine binding site 4 out of 12 in 6ftt

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Chlorine binding site 4 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl402

b:54.9
occ:1.00
 O E:HOH402 3.0 48.0 1.0
NH1 E:ARG211 3.3 63.6 1.0
OG D:SER277 3.4 53.9 1.0
CD E:ARG211 3.8 53.6 1.0
OG E:SER208 3.9 41.0 1.0
CB D:SER277 4.0 49.8 1.0
CA E:SER208 4.0 41.4 1.0
CB E:ARG211 4.0 49.5 1.0
CD E:LYS212 4.0 52.7 1.0
CE E:LYS212 4.2 52.2 1.0
CG1 E:VAL207 4.2 45.0 1.0
CG E:LYS212 4.2 50.6 1.0
N E:SER208 4.3 41.0 1.0
OD1 E:ASP87 4.3 48.9 1.0
CZ E:ARG211 4.4 61.8 1.0
CG E:ARG211 4.4 52.7 1.0
O E:VAL207 4.4 40.9 1.0
CB E:SER208 4.5 41.4 1.0
C E:VAL207 4.5 42.1 1.0
CA D:SER277 4.5 49.2 1.0
NE E:ARG211 4.5 57.3 1.0
NZ E:LYS212 4.6 52.7 1.0

Chlorine binding site 5 out of 12 in 6ftt

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Chlorine binding site 5 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:57.0
occ:1.00
 NE2 D:GLN118 3.4 37.5 1.0
N D:ASP310 3.8 37.0 1.0
C D:MET309 3.9 38.9 1.0
CG D:GLN118 3.9 35.3 1.0
CB D:GLN118 3.9 34.7 1.0
CB D:PRO116 4.0 37.3 1.0
CB D:ASP310 4.0 37.4 1.0
O D:MET309 4.0 38.1 1.0
CA D:ASP310 4.1 36.1 1.0
CG D:PRO116 4.1 38.3 1.0
CD D:GLN118 4.2 37.3 1.0
CA D:GLN118 4.2 33.9 1.0
CA D:MET309 4.5 38.8 1.0
N D:MET309 4.8 37.5 1.0
N D:GLN118 4.9 33.2 1.0
CG D:ASP310 4.9 38.2 1.0
CG2 D:VAL102 5.0 37.0 1.0

Chlorine binding site 6 out of 12 in 6ftt

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Chlorine binding site 6 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl302

b:76.9
occ:1.00
 NH1 E:ARG185 3.5 65.7 1.0
N E:ALA191 3.6 62.5 1.0
CA E:GLU190 3.8 66.2 1.0
CB E:GLU190 3.9 70.9 1.0
C E:GLU190 4.2 63.9 1.0
CG E:ARG185 4.2 66.8 1.0
CD E:ARG185 4.4 68.2 1.0
CB E:ALA191 4.5 61.4 1.0
CA E:ALA191 4.6 62.2 1.0
CZ E:ARG185 4.6 68.4 1.0
O E:ALA191 4.8 64.6 1.0
O E:LEU189 4.8 62.9 1.0
NE E:ARG185 4.9 70.1 1.0

Chlorine binding site 7 out of 12 in 6ftt

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Chlorine binding site 7 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl302

b:67.0
occ:1.00
 N H:ALA191 3.5 59.4 1.0
NH1 H:ARG185 3.7 62.4 1.0
CA H:GLU190 3.7 62.4 1.0
CB H:GLU190 3.8 65.2 1.0
CG H:ARG185 4.1 63.4 1.0
C H:GLU190 4.1 59.9 1.0
CD H:ARG185 4.3 63.0 1.0
CB H:ALA191 4.4 61.0 1.0
CA H:ALA191 4.6 60.4 1.0
O H:LEU189 4.7 58.5 1.0
CZ H:ARG185 4.8 61.8 1.0
O H:ALA191 4.8 61.4 1.0
N H:GLU190 5.0 59.4 1.0
NE H:ARG185 5.0 62.8 1.0

Chlorine binding site 8 out of 12 in 6ftt

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Chlorine binding site 8 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl303

b:61.2
occ:1.00
 CG1 H:VAL207 4.0 40.6 1.0
OG H:SER208 4.0 40.9 1.0
CE H:LYS212 4.0 51.7 1.0
CB H:ARG211 4.1 56.8 1.0
CA H:SER208 4.2 43.1 1.0
OD1 H:ASP87 4.2 47.8 1.0
CG H:LYS212 4.3 49.2 1.0
CD H:LYS212 4.3 50.1 1.0
CG H:ARG211 4.4 61.2 1.0
N H:SER208 4.4 43.5 1.0
NZ H:LYS212 4.5 52.7 1.0
CB H:SER208 4.6 41.0 1.0
C H:VAL207 4.7 43.2 1.0
O H:VAL207 4.8 47.8 1.0
CB H:VAL207 4.8 40.7 1.0

Chlorine binding site 9 out of 12 in 6ftt

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Chlorine binding site 9 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl302

b:69.4
occ:1.00
 NH1 G:ARG185 3.3 58.3 1.0
N G:ALA191 3.4 49.6 1.0
CA G:GLU190 3.7 53.4 1.0
CB G:GLU190 3.9 55.7 1.0
CG G:ARG185 3.9 56.4 1.0
C G:GLU190 4.1 51.7 1.0
CD G:ARG185 4.2 58.0 1.0
CB G:ALA191 4.4 50.0 1.0
CZ G:ARG185 4.4 60.0 1.0
CA G:ALA191 4.5 50.7 1.0
O G:LEU189 4.6 51.2 1.0
NE G:ARG185 4.8 60.1 1.0
O G:ALA191 4.8 50.0 1.0
O G:GLY181 4.9 56.7 1.0
N G:GLU190 4.9 50.7 1.0

Chlorine binding site 10 out of 12 in 6ftt

Go back to Chlorine Binding Sites List in 6ftt
Chlorine binding site 10 out of 12 in the Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Atp Phosphoribosyltransferase (Hiszg Atpprt) From Psychrobacter Arcticus in Complex with Prpp within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl303

b:81.0
occ:1.00
 NH2 G:ARG143 3.4 61.6 1.0
CG1 G:VAL139 3.7 46.3 1.0
CB G:LYS157 4.2 42.7 1.0
CG2 G:VAL139 4.2 43.4 1.0
CB G:VAL139 4.5 43.9 1.0
CZ G:ARG143 4.6 60.5 1.0
N G:LYS157 4.9 38.7 1.0

Reference:

M.S.Alphey, G.Fisher, J.S.Hirschi, R.Stroek, Y.Ge, E.R.Gould, C.M.Czekster, H.Liu, G.J.Florence, M.J.Vetticatt, J.H.Naismith, R.G.Da Silva. Catalytic and Anticatalytic Snapshots of A Short-Form Atp Phosphoribosyltransferase Acs Catalysis 2018.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.8B00867
Page generated: Sat Jul 27 23:33:06 2024

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