Chlorine in PDB 6fzo: Smurfp-Y56F Mutant

Protein crystallography data

The structure of Smurfp-Y56F Mutant, PDB code: 6fzo was solved by R.Janowski, J.P.Fuenzalida-Wernera, K.Mishra, P.Vetschera, I.Weidenfeld, K.Richter, D.Niessing, V.Ntziachristos, A.C.Stiel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.310, 77.320, 79.490, 90.00, 92.83, 90.00
R / Rfree (%) 26 / 30.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Smurfp-Y56F Mutant (pdb code 6fzo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Smurfp-Y56F Mutant, PDB code: 6fzo:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6fzo

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Chlorine binding site 1 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Smurfp-Y56F Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:72.9
occ:1.00
ND2 A:ASN118 3.4 33.5 1.0
CG A:ASN118 4.4 39.6 1.0
OD1 A:ASN118 4.6 41.6 1.0

Chlorine binding site 2 out of 6 in 6fzo

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Chlorine binding site 2 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Smurfp-Y56F Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:73.7
occ:1.00
CH2 A:TRP30 3.8 30.4 1.0
O A:ARG31 4.0 28.3 1.0
CZ3 A:TRP30 4.0 31.8 1.0
NH1 A:ARG31 4.1 46.2 1.0
CZ2 A:TRP30 4.1 29.1 1.0
O C:ASP35 4.2 31.3 1.0
CG A:PRO34 4.3 38.2 1.0
CB C:ASP35 4.4 33.0 1.0
O A:HOH322 4.4 39.2 1.0
CA C:ASP35 4.5 31.8 1.0
CA A:ARG31 4.5 35.6 1.0
O A:TRP30 4.5 37.7 1.0
CE3 A:TRP30 4.5 31.8 1.0
CD A:ARG31 4.5 45.0 1.0
CE2 A:TRP30 4.5 29.8 1.0
C A:ARG31 4.6 35.4 1.0
CB A:PRO34 4.7 38.3 1.0
CD2 A:TRP30 4.8 30.5 1.0
C C:ASP35 4.8 30.4 1.0
CD A:PRO34 4.9 36.4 1.0
CZ A:ARG31 5.0 50.0 1.0

Chlorine binding site 3 out of 6 in 6fzo

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Chlorine binding site 3 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Smurfp-Y56F Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:59.7
occ:1.00
NZ B:LYS18 2.6 34.1 0.5
NZ C:LYS18 2.7 46.7 1.0
O C:HOH321 3.0 31.4 1.0
CE B:LYS18 3.5 34.7 0.5
CE B:LYS18 3.8 32.5 0.5
CA B:GLY57 3.8 38.4 1.0
CD B:ARG54 3.9 51.7 1.0
CE C:LYS18 4.0 43.9 1.0
O3 C:SO4202 4.1 79.6 1.0
C B:GLY57 4.2 43.7 1.0
CE1 C:HIS61 4.2 33.6 1.0
NE2 C:HIS61 4.2 33.1 1.0
CD C:LYS18 4.3 37.5 1.0
O B:ARG54 4.4 38.2 1.0
CA B:ARG54 4.4 40.1 1.0
CG B:ARG54 4.4 45.1 1.0
NZ B:LYS18 4.5 31.2 0.5
N B:TRP58 4.6 47.5 1.0
N B:GLY57 4.6 31.6 1.0
O2 C:SO4202 4.7 88.5 1.0
O B:GLY57 4.7 43.0 1.0
C B:ARG54 4.8 39.5 1.0
NE B:ARG54 4.9 58.3 1.0
CD B:LYS18 4.9 36.0 0.5
O B:LEU53 4.9 46.7 1.0
CE1 B:HIS61 5.0 33.5 1.0
CB B:ARG54 5.0 39.2 1.0

Chlorine binding site 4 out of 6 in 6fzo

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Chlorine binding site 4 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Smurfp-Y56F Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl206

b:55.2
occ:1.00
OD2 B:ASP113 3.4 47.0 1.0
OE2 B:GLU115 3.8 66.9 1.0
CG B:ASP113 3.8 44.8 1.0
CB B:ASP113 4.1 42.1 1.0
OD1 B:ASP113 4.4 54.6 1.0
CD B:GLU115 4.6 63.1 1.0
CG B:GLU115 4.8 54.7 1.0

Chlorine binding site 5 out of 6 in 6fzo

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Chlorine binding site 5 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Smurfp-Y56F Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl205

b:65.9
occ:1.00
NH1 C:ARG32 3.0 68.2 1.0
NE2 C:HIS33 3.6 59.1 1.0
CZ C:ARG32 4.3 72.1 1.0
CD2 C:HIS33 4.5 50.0 1.0
CE1 C:HIS33 4.5 57.0 1.0
OE2 C:GLU99 4.8 60.5 1.0
CD C:GLU99 4.9 60.0 1.0
CD C:ARG32 4.9 67.6 1.0
OE1 C:GLU99 4.9 65.7 1.0

Chlorine binding site 6 out of 6 in 6fzo

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Chlorine binding site 6 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Smurfp-Y56F Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl202

b:65.2
occ:1.00
O D:HOH312 3.6 41.2 1.0
N D:ARG47 3.8 64.9 1.0
CB D:ARG47 4.3 72.5 1.0
CA D:GLN46 4.3 55.5 1.0
O D:SER45 4.5 46.6 1.0
C D:GLN46 4.6 60.0 1.0
CA D:ARG47 4.7 72.5 1.0
CG D:GLN46 4.8 59.5 1.0

Reference:

J.P.Fuenzalida-Werner, R.Janowski, K.Mishra, I.Weidenfeld, D.Niessing, V.Ntziachristos, A.C.Stiel. Crystal Structure of A Biliverdin-Bound Phycobiliprotein: Interdependence of Oligomerization and Chromophorylation. J. Struct. Biol. V. 204 519 2018.
ISSN: ESSN 1095-8657
PubMed: 30287387
DOI: 10.1016/J.JSB.2018.09.013
Page generated: Sat Dec 12 13:00:14 2020

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