Chlorine in PDB 6fzo: Smurfp-Y56F Mutant

The structure of Smurfp-Y56F Mutant, PDB code: 6fzo was solved by R.Janowski, J.P.Fuenzalida-Wernera, K.Mishra, P.Vetschera, I.Weidenfeld, K.Richter, D.Niessing, V.Ntziachristos, A.C.Stiel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.310, 77.320, 79.490, 90.00, 92.83, 90.00
R / Rfree (%)	26 / 30.9

The binding sites of Chlorine atom in the Smurfp-Y56F Mutant (pdb code 6fzo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Smurfp-Y56F Mutant, PDB code: 6fzo:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Smurfp-Y56F Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:72.9 occ:1.00 ND2 A:ASN118 3.4 33.5 1.0 CG A:ASN118 4.4 39.6 1.0 OD1 A:ASN118 4.6 41.6 1.0

Chlorine binding site 2 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Smurfp-Y56F Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl206 b:73.7 occ:1.00 CH2 A:TRP30 3.8 30.4 1.0 O A:ARG31 4.0 28.3 1.0 CZ3 A:TRP30 4.0 31.8 1.0 NH1 A:ARG31 4.1 46.2 1.0 CZ2 A:TRP30 4.1 29.1 1.0 O C:ASP35 4.2 31.3 1.0 CG A:PRO34 4.3 38.2 1.0 CB C:ASP35 4.4 33.0 1.0 O A:HOH322 4.4 39.2 1.0 CA C:ASP35 4.5 31.8 1.0 CA A:ARG31 4.5 35.6 1.0 O A:TRP30 4.5 37.7 1.0 CE3 A:TRP30 4.5 31.8 1.0 CD A:ARG31 4.5 45.0 1.0 CE2 A:TRP30 4.5 29.8 1.0 C A:ARG31 4.6 35.4 1.0 CB A:PRO34 4.7 38.3 1.0 CD2 A:TRP30 4.8 30.5 1.0 C C:ASP35 4.8 30.4 1.0 CD A:PRO34 4.9 36.4 1.0 CZ A:ARG31 5.0 50.0 1.0

Chlorine binding site 3 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Smurfp-Y56F Mutant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl205 b:59.7 occ:1.00 NZ B:LYS18 2.6 34.1 0.5 NZ C:LYS18 2.7 46.7 1.0 O C:HOH321 3.0 31.4 1.0 CE B:LYS18 3.5 34.7 0.5 CE B:LYS18 3.8 32.5 0.5 CA B:GLY57 3.8 38.4 1.0 CD B:ARG54 3.9 51.7 1.0 CE C:LYS18 4.0 43.9 1.0 O3 C:SO4202 4.1 79.6 1.0 C B:GLY57 4.2 43.7 1.0 CE1 C:HIS61 4.2 33.6 1.0 NE2 C:HIS61 4.2 33.1 1.0 CD C:LYS18 4.3 37.5 1.0 O B:ARG54 4.4 38.2 1.0 CA B:ARG54 4.4 40.1 1.0 CG B:ARG54 4.4 45.1 1.0 NZ B:LYS18 4.5 31.2 0.5 N B:TRP58 4.6 47.5 1.0 N B:GLY57 4.6 31.6 1.0 O2 C:SO4202 4.7 88.5 1.0 O B:GLY57 4.7 43.0 1.0 C B:ARG54 4.8 39.5 1.0 NE B:ARG54 4.9 58.3 1.0 CD B:LYS18 4.9 36.0 0.5 O B:LEU53 4.9 46.7 1.0 CE1 B:HIS61 5.0 33.5 1.0 CB B:ARG54 5.0 39.2 1.0

Chlorine binding site 4 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Smurfp-Y56F Mutant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl206 b:55.2 occ:1.00 OD2 B:ASP113 3.4 47.0 1.0 OE2 B:GLU115 3.8 66.9 1.0 CG B:ASP113 3.8 44.8 1.0 CB B:ASP113 4.1 42.1 1.0 OD1 B:ASP113 4.4 54.6 1.0 CD B:GLU115 4.6 63.1 1.0 CG B:GLU115 4.8 54.7 1.0

Chlorine binding site 5 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Smurfp-Y56F Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl205 b:65.9 occ:1.00 NH1 C:ARG32 3.0 68.2 1.0 NE2 C:HIS33 3.6 59.1 1.0 CZ C:ARG32 4.3 72.1 1.0 CD2 C:HIS33 4.5 50.0 1.0 CE1 C:HIS33 4.5 57.0 1.0 OE2 C:GLU99 4.8 60.5 1.0 CD C:GLU99 4.9 60.0 1.0 CD C:ARG32 4.9 67.6 1.0 OE1 C:GLU99 4.9 65.7 1.0

Chlorine binding site 6 out of 6 in the Smurfp-Y56F Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Smurfp-Y56F Mutant within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl202 b:65.2 occ:1.00 O D:HOH312 3.6 41.2 1.0 N D:ARG47 3.8 64.9 1.0 CB D:ARG47 4.3 72.5 1.0 CA D:GLN46 4.3 55.5 1.0 O D:SER45 4.5 46.6 1.0 C D:GLN46 4.6 60.0 1.0 CA D:ARG47 4.7 72.5 1.0 CG D:GLN46 4.8 59.5 1.0

J.P.Fuenzalida-Werner, R.Janowski, K.Mishra, I.Weidenfeld, D.Niessing, V.Ntziachristos, A.C.Stiel. Crystal Structure of A Biliverdin-Bound Phycobiliprotein: Interdependence of Oligomerization and Chromophorylation. J. Struct. Biol. V. 204 519 2018.
ISSN: ESSN 1095-8657
PubMed: 30287387
DOI: 10.1016/J.JSB.2018.09.013