Chlorine in PDB 6g1n: Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb

The structure of Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb, PDB code: 6g1n was solved by A.J.Winter, C.Williams, M.P.Crump, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.47 / 1.85
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	62.580, 62.580, 173.490, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 24.1

The binding sites of Chlorine atom in the Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb (pdb code 6g1n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb, PDB code: 6g1n:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:55.4 occ:1.00 O D:HOH312 3.0 54.0 1.0 OG A:SER120 3.2 62.3 1.0 N A:SER120 3.2 44.9 1.0 CB A:SER120 3.5 55.5 1.0 CB A:THR118 3.8 46.1 1.0 N A:ARG119 3.8 42.4 1.0 CB A:ARG119 3.9 41.4 1.0 CA A:SER120 3.9 55.1 1.0 OG1 A:THR118 4.1 46.6 1.0 C A:ARG119 4.1 46.3 1.0 CA A:ARG119 4.1 42.5 1.0 O A:HOH327 4.2 43.8 1.0 C A:THR118 4.5 43.7 1.0 O A:HOH339 4.7 80.4 1.0 CA A:THR118 4.7 40.7 1.0 CG2 A:THR118 4.7 48.6 1.0 O D:ASN97 4.8 60.5 0.6 O D:ASN97 4.9 62.4 0.4 CG A:ARG119 4.9 43.7 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:91.2 occ:1.00 NH2 A:ARG125 3.2 56.5 1.0 N A:THR118 3.4 45.3 1.0 NH1 A:ARG125 3.4 54.7 1.0 CA A:GLU117 3.5 48.6 1.0 CB A:GLU117 3.6 43.1 1.0 CA A:GLY121 3.7 48.1 1.0 CZ A:ARG125 3.8 64.8 1.0 OG1 A:THR118 3.8 46.6 1.0 CG A:GLU117 3.9 45.8 1.0 C A:GLU117 3.9 52.0 1.0 N A:GLY121 4.3 45.4 1.0 C A:GLY121 4.4 52.9 1.0 CA A:THR118 4.4 40.7 1.0 O A:HIS116 4.5 41.0 1.0 O A:THR118 4.5 41.5 1.0 CB A:THR118 4.5 46.1 1.0 N A:PHE122 4.6 47.0 1.0 CG2 A:THR118 4.7 48.6 1.0 N A:GLU117 4.7 39.3 1.0 CD A:GLU117 4.9 50.0 1.0 C A:THR118 5.0 43.7 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:59.0 occ:1.00 N B:THR118 3.2 46.8 1.0 NH2 B:ARG125 3.2 54.3 1.0 CA B:GLU117 3.4 44.1 1.0 NH1 B:ARG125 3.5 56.1 1.0 CA B:GLY121 3.6 44.0 1.0 CB B:GLU117 3.6 42.5 1.0 OG1 B:THR118 3.7 46.3 1.0 C B:GLU117 3.8 49.2 1.0 CZ B:ARG125 3.9 59.8 1.0 CG B:GLU117 4.0 46.2 1.0 N B:GLY121 4.2 42.6 1.0 C B:GLY121 4.3 50.3 1.0 CA B:THR118 4.3 39.7 1.0 CB B:THR118 4.4 42.7 1.0 O B:THR118 4.4 43.8 1.0 O B:HIS116 4.5 39.5 1.0 CG2 B:THR118 4.5 47.7 1.0 N B:PHE122 4.5 45.5 1.0 N B:GLU117 4.7 41.5 1.0 O B:HOH304 4.8 51.2 1.0 C B:THR118 4.8 47.1 1.0 CD B:GLU117 4.9 52.3 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Burkholderia Pseudomallei Antitoxin Hicb within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl202 b:59.0 occ:1.00 O C:HOH326 3.1 54.1 1.0 OG B:SER120 3.2 64.2 1.0 N B:SER120 3.2 44.3 1.0 CB B:SER120 3.5 51.4 1.0 CB B:THR118 3.8 42.7 1.0 N B:ARG119 3.8 39.2 1.0 CB B:ARG119 3.9 39.2 1.0 CA B:SER120 3.9 51.6 1.0 OG1 B:THR118 4.0 46.3 1.0 C B:ARG119 4.1 44.1 1.0 CA B:ARG119 4.1 45.2 1.0 O B:HOH339 4.2 44.4 1.0 C B:THR118 4.5 47.1 1.0 O B:HOH304 4.6 51.2 1.0 CA B:THR118 4.7 39.7 1.0 CG2 B:THR118 4.7 47.7 1.0 O B:HOH345 4.8 69.2 1.0 O C:ASN97 4.9 65.0 1.0 CG1 C:VAL98 4.9 58.9 1.0 CG B:ARG119 5.0 42.2 1.0

A.J.Winter, C.Williams, M.N.Isupov, H.Crocker, M.Gromova, P.Marsh, O.J.Wilkinson, M.S.Dillingham, N.J.Harmer, R.W.Titball, M.P.Crump. The Molecular Basis of Protein Toxin Hica-Dependent Binding of the Protein Antitoxin Hicb to Dna. J. Biol. Chem. V. 293 19429 2018.
ISSN: ESSN 1083-351X
PubMed: 30337369
DOI: 10.1074/JBC.RA118.005173