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Chlorine in PDB 6g20: Crystal Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in Its Functional Meta-F Intermediate State.

Protein crystallography data

The structure of Crystal Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in Its Functional Meta-F Intermediate State., PDB code: 6g20 was solved by A.Schmidt, L.Sauthof, M.Szczepek, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 158.58 / 2.16
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 183.114, 183.114, 179.655, 90.00, 90.00, 120.00
R / Rfree (%) 20.9 / 23.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in Its Functional Meta-F Intermediate State. (pdb code 6g20). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in Its Functional Meta-F Intermediate State., PDB code: 6g20:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6g20

Go back to Chlorine Binding Sites List in 6g20
Chlorine binding site 1 out of 2 in the Crystal Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in Its Functional Meta-F Intermediate State.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in Its Functional Meta-F Intermediate State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl612

b:71.9
occ:1.00
NH1 A:ARG311 3.0 60.1 1.0
NE1 A:TRP272 3.4 34.6 1.0
NZ A:LYS308 3.6 42.6 1.0
CZ2 A:TRP272 4.0 34.4 1.0
CD A:LYS308 4.0 42.6 1.0
CG A:LYS308 4.0 41.4 1.0
CE2 A:TRP272 4.1 34.1 1.0
CZ A:ARG311 4.1 60.0 1.0
CD A:ARG166 4.2 39.8 1.0
CE A:LYS308 4.4 42.6 1.0
NH1 A:ARG166 4.4 41.5 1.0
NH2 A:ARG311 4.4 61.3 1.0
CD1 A:TRP272 4.6 34.6 1.0
CG1 A:VAL142 4.6 38.3 1.0
NE A:ARG166 4.9 40.6 1.0

Chlorine binding site 2 out of 2 in 6g20

Go back to Chlorine Binding Sites List in 6g20
Chlorine binding site 2 out of 2 in the Crystal Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in Its Functional Meta-F Intermediate State.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in Its Functional Meta-F Intermediate State. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl612

b:65.8
occ:1.00
O B:HOH824 2.9 59.2 1.0
N B:ARG130 3.3 48.1 1.0
CA B:GLY127 3.5 75.1 1.0
C B:GLY127 3.6 67.7 1.0
N B:ALA129 3.7 50.6 1.0
CB B:ARG130 3.8 52.2 1.0
O B:GLY127 3.9 64.4 1.0
CB B:ALA129 3.9 47.9 1.0
N B:THR128 4.0 63.1 1.0
CA B:ALA129 4.1 48.3 1.0
CA B:ARG130 4.1 50.4 1.0
C B:ALA129 4.1 47.9 1.0
N B:GLY127 4.4 81.9 1.0
C B:THR128 4.5 55.1 1.0
O B:HOH822 4.8 61.2 1.0
CA B:THR128 4.8 59.6 1.0
SD B:MET295 5.0 48.7 0.5

Reference:

A.Schmidt, L.Sauthof, M.Szczepek, M.F.Lopez, F.V.Escobar, B.M.Qureshi, N.Michael, D.Buhrke, T.Stevens, D.Kwiatkowski, D.Von Stetten, M.A.Mroginski, N.Krauss, T.Lamparter, P.Hildebrandt, P.Scheerer. Structural Snapshot of A Bacterial Phytochrome in Its Functional Intermediate State. Nat Commun V. 9 4912 2018.
ISSN: ESSN 2041-1723
PubMed: 30464203
DOI: 10.1038/S41467-018-07392-7
Page generated: Sat Jul 27 23:40:38 2024

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