Chlorine in PDB 6g59: Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative

Enzymatic activity of Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative

All present enzymatic activity of Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative:
5.1.1.1;

Protein crystallography data

The structure of Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative, PDB code: 6g59 was solved by A.Hoegl, S.A.Sieber, S.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.50 / 2.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.924, 106.855, 131.023, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.5

Other elements in 6g59:

The structure of Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative (pdb code 6g59). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative, PDB code: 6g59:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6g59

Go back to Chlorine Binding Sites List in 6g59
Chlorine binding site 1 out of 2 in the Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl409

b:55.5
occ:1.00
 N A:ASN31 3.3 37.7 1.0
C A:HIS29 3.6 35.8 1.0
CA A:HIS29 3.6 34.9 1.0
N A:PRO30 3.7 35.4 1.0
NZ A:LYS32 3.7 35.6 1.0
CD A:PRO30 3.8 35.8 1.0
CG A:LYS32 3.9 33.2 1.0
CB A:ASN31 3.9 40.7 1.0
CA A:ASN31 3.9 38.2 1.0
O A:HIS29 4.1 37.5 1.0
CB A:HIS29 4.1 33.2 1.0
C A:ASN31 4.2 35.8 1.0
N A:LYS32 4.2 33.2 1.0
OD1 A:ASN31 4.3 48.9 1.0
C A:PRO30 4.4 36.4 1.0
CG A:PRO30 4.4 36.6 1.0
CG A:ASN31 4.5 44.9 1.0
ND1 A:HIS29 4.5 32.6 1.0
CD A:LYS32 4.5 33.8 1.0
CA A:PRO30 4.5 35.6 1.0
CE A:LYS32 4.6 33.7 1.0
CB A:LYS32 4.7 32.1 1.0
O A:LEU28 4.8 35.7 1.0
CG A:HIS29 4.8 33.0 1.0
O A:ASN31 4.8 35.4 1.0
N A:HIS29 4.9 36.3 1.0

Chlorine binding site 2 out of 2 in 6g59

Go back to Chlorine Binding Sites List in 6g59
Chlorine binding site 2 out of 2 in the Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Alanine Racemase From Staphylococcus Aureus in Complex with An Pyridoxal-6- Phosphate Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:53.4
occ:1.00
 N B:ASN31 3.3 32.6 1.0
C B:HIS29 3.6 31.2 1.0
CA B:HIS29 3.7 31.6 1.0
NZ B:LYS32 3.7 34.7 1.0
N B:PRO30 3.7 31.7 1.0
CB B:ASN31 3.8 35.0 1.0
CD B:PRO30 3.8 33.3 1.0
CG B:LYS32 3.9 30.4 1.0
CA B:ASN31 3.9 33.4 1.0
OD1 B:ASN31 4.1 43.1 1.0
C B:ASN31 4.1 31.7 1.0
O B:HIS29 4.2 29.8 1.0
CB B:HIS29 4.2 31.2 1.0
N B:LYS32 4.2 30.4 1.0
CG B:ASN31 4.3 39.8 1.0
C B:PRO30 4.4 32.8 1.0
CG B:PRO30 4.4 34.2 1.0
ND1 B:HIS29 4.5 32.6 1.0
CD B:LYS32 4.5 31.2 1.0
CE B:LYS32 4.5 32.6 1.0
CA B:PRO30 4.6 32.8 1.0
CB B:LYS32 4.7 29.1 1.0
O B:ASN31 4.8 32.0 1.0
CG B:HIS29 4.8 31.8 1.0
O B:LEU28 4.8 35.8 1.0
N B:HIS29 4.9 32.0 1.0

Reference:

A.Hoegl, M.B.Nodwell, V.C.Kirsch, N.C.Bach, M.Pfanzelt, M.Stahl, S.Schneider, S.A.Sieber. Mining the Cellular Inventory of Pyridoxal Phosphate-Dependent Enzymes with Functionalized Cofactor Mimics. Nat Chem V. 10 1234 2018.
ISSN: ESSN 1755-4349
PubMed: 30297752
DOI: 10.1038/S41557-018-0144-2
Page generated: Sat Dec 12 13:00:42 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy