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Chlorine in PDB 6g5v: The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0)

Enzymatic activity of The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0)

All present enzymatic activity of The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0):
3.2.1.17;

Protein crystallography data

The structure of The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0), PDB code: 6g5v was solved by A.Merlino, G.Ferraro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.18 / 1.96
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.455, 79.455, 36.490, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 25

Other elements in 6g5v:

The structure of The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0) also contains other interesting chemical elements:

Platinum (Pt) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0) (pdb code 6g5v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0), PDB code: 6g5v:

Chlorine binding site 1 out of 1 in 6g5v

Go back to Chlorine Binding Sites List in 6g5v
Chlorine binding site 1 out of 1 in the The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The X-Ray Structure of the Adduct Formed in the Reaction Between Lysozyme and A Platinum(II) Terpyridine Compound (pH 7.0) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:40.1
occ:1.00
N A:ASN59 3.6 25.2 1.0
O A:GLN57 3.8 23.6 1.0
CA A:ILE58 3.9 26.7 1.0
CB A:ASN59 3.9 27.1 1.0
CD1 A:TRP63 4.1 28.2 1.0
C A:ILE58 4.3 26.0 1.0
NE1 A:TRP63 4.3 29.2 1.0
CD1 A:ILE98 4.4 25.1 1.0
O A:ALA107 4.4 28.0 1.0
CA A:ASN59 4.4 26.1 1.0
NE1 A:TRP108 4.5 24.8 1.0
C A:GLN57 4.6 22.2 1.0
N A:ILE58 4.7 22.6 1.0
CB A:ILE58 4.8 30.9 1.0
CG1 A:ILE58 4.8 31.5 1.0
CD1 A:TRP108 4.8 22.4 1.0
CE2 A:TRP108 4.9 24.6 1.0
CG2 A:ILE58 4.9 32.6 1.0

Reference:

G.Ferraro, T.Marzo, T.Infrasca, A.Cilibrizzi, R.Vilar, L.Messori, A.Merlino. A Case of Extensive Protein Platination: the Reaction of Lysozyme with A Pt(II)-Terpyridine Complex. Dalton Trans V. 47 8716 2018.
ISSN: ESSN 1477-9234
PubMed: 29904761
DOI: 10.1039/C8DT01254G
Page generated: Wed Oct 28 13:27:26 2020

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