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Chlorine in PDB 6g7p: Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands.

Protein crystallography data

The structure of Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands., PDB code: 6g7p was solved by M.M.Machelett, I.Tews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 82.92 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.990, 82.920, 64.860, 90.00, 95.19, 90.00
R / Rfree (%) 14.8 / 17.4

Other elements in 6g7p:

The structure of Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands. also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands. (pdb code 6g7p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands., PDB code: 6g7p:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6g7p

Go back to Chlorine Binding Sites List in 6g7p
Chlorine binding site 1 out of 2 in the Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:15.0
occ:1.00
O A:HOH768 3.1 26.1 1.0
O A:HOH663 3.1 13.2 1.0
O B:HOH549 3.1 14.7 1.0
O A:HOH624 3.2 12.1 1.0
N B:ASN298 3.2 9.4 1.0
CB A:ALA89 3.8 10.8 1.0
CB B:ASN298 3.9 10.2 1.0
CG2 B:VAL301 3.9 17.5 1.0
CG2 B:THR297 4.0 11.9 1.0
CA B:THR297 4.0 9.8 1.0
C B:THR297 4.1 10.4 1.0
CA B:ASN298 4.1 9.9 1.0
O B:HOH754 4.2 19.4 1.0
O B:ASN298 4.5 10.8 1.0
CB B:THR297 4.5 11.2 1.0
O A:ALA89 4.7 9.7 1.0
O A:HOH603 4.7 25.8 1.0
C B:ASN298 4.8 10.6 1.0
CA A:ALA89 4.9 9.5 1.0
C A:ALA89 4.9 9.9 1.0
OG1 B:THR297 4.9 11.7 1.0
ND2 A:ASN298 4.9 10.5 1.0
O B:HOH564 5.0 12.9 1.0
OE2 B:GLU154 5.0 15.6 1.0

Chlorine binding site 2 out of 2 in 6g7p

Go back to Chlorine Binding Sites List in 6g7p
Chlorine binding site 2 out of 2 in the Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Trichodesmium TERY_3377 (Idia) (Futa) with Iron and Water Ligands. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:15.5
occ:1.00
O B:HOH777 3.1 29.9 1.0
O B:HOH664 3.1 14.8 1.0
O B:HOH641 3.2 12.0 1.0
O A:HOH574 3.2 15.6 1.0
N A:ASN298 3.2 9.6 1.0
CB A:ASN298 3.8 10.6 1.0
CB B:ALA89 3.8 11.2 1.0
CG2 A:VAL301 3.9 18.1 1.0
CA A:THR297 3.9 11.2 1.0
CG2 A:THR297 4.0 12.8 1.0
C A:THR297 4.0 10.8 1.0
CA A:ASN298 4.1 9.3 1.0
O B:HOH754 4.1 19.4 1.0
CB A:THR297 4.5 11.8 1.0
O A:ASN298 4.5 10.6 1.0
O B:ALA89 4.7 10.2 1.0
O B:HOH607 4.8 25.7 1.0
C A:ASN298 4.8 10.6 1.0
CA B:ALA89 4.9 10.4 1.0
C B:ALA89 4.9 10.8 1.0
OG1 A:THR297 4.9 11.5 1.0
ND2 B:ASN298 5.0 10.7 1.0
O A:HOH569 5.0 12.1 1.0
O A:HOH536 5.0 11.6 1.0

Reference:

D.Polyviou, M.M.Machelett, A.Hitchcock, A.J.Baylay, F.Macmillan, C.M.Moore, T.S.Bibby, I.Tews. Structural and Functional Characterization of Idia/Futa (TERY_3377), An Iron-Binding Protein From the Ocean Diazotrophtrichodesmium Erythraeum. J. Biol. Chem. V. 293 18099 2018.
ISSN: ESSN 1083-351X
PubMed: 30217820
DOI: 10.1074/JBC.RA118.001929
Page generated: Sat Jul 27 23:48:27 2024

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