Chlorine in PDB 6g8a: Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Enzymatic activity of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
All present enzymatic activity of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector:
3.2.1.17;
Protein crystallography data
The structure of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector, PDB code: 6g8a
was solved by
F.Leonarski,
V.Olieric,
L.Vera,
S.Redford,
M.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
22.26 /
1.14
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.903,
78.903,
36.941,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
11.2 /
13
|
Other elements in 6g8a:
The structure of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
17;
Binding sites:
The binding sites of Chlorine atom in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
(pdb code 6g8a). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 17 binding sites of Chlorine where determined in the
Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector, PDB code: 6g8a:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 1 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl201
b:15.1
occ:0.78
|
HD22
|
C:ASN65
|
2.4
|
14.0
|
1.0
|
HB3
|
C:PRO79
|
2.9
|
10.6
|
1.0
|
HB3
|
C:ASN65
|
3.0
|
10.3
|
1.0
|
O
|
C:HOH415
|
3.1
|
17.3
|
1.0
|
O
|
C:HOH435
|
3.1
|
38.9
|
1.0
|
O
|
C:HOH433
|
3.1
|
25.5
|
0.7
|
HA
|
C:PRO79
|
3.2
|
10.2
|
1.0
|
ND2
|
C:ASN65
|
3.3
|
11.7
|
1.0
|
CB
|
C:PRO79
|
3.7
|
8.8
|
1.0
|
CA
|
C:PRO79
|
3.7
|
8.5
|
1.0
|
HD21
|
C:ASN65
|
3.8
|
14.0
|
1.0
|
HD3
|
C:PRO79
|
3.9
|
13.2
|
1.0
|
CB
|
C:ASN65
|
3.9
|
8.6
|
1.0
|
N
|
C:PRO79
|
3.9
|
9.1
|
1.0
|
CG
|
C:ASN65
|
4.1
|
9.8
|
1.0
|
CD
|
C:PRO79
|
4.3
|
11.0
|
1.0
|
HB2
|
C:ASN65
|
4.3
|
10.3
|
1.0
|
O
|
C:ASN65
|
4.3
|
7.3
|
1.0
|
HB2
|
C:PRO79
|
4.4
|
10.6
|
1.0
|
CG
|
C:PRO79
|
4.5
|
12.3
|
1.0
|
C
|
C:ILE78
|
4.5
|
9.2
|
1.0
|
HD21
|
C:ASN74
|
4.5
|
14.1
|
1.0
|
HG3
|
C:PRO79
|
4.5
|
14.7
|
1.0
|
O
|
C:ILE78
|
4.7
|
8.9
|
1.0
|
HD22
|
C:ASN74
|
4.8
|
14.1
|
1.0
|
H
|
C:ASN65
|
4.9
|
9.1
|
1.0
|
ND2
|
C:ASN74
|
4.9
|
11.8
|
1.0
|
C
|
C:ASN65
|
4.9
|
6.6
|
1.0
|
CA
|
C:ASN65
|
5.0
|
7.9
|
1.0
|
|
Chlorine binding site 2 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 2 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl202
b:21.6
occ:0.69
|
HD22
|
C:ASN74
|
2.4
|
14.1
|
1.0
|
HB2
|
C:ASN65
|
3.1
|
10.3
|
1.0
|
ND2
|
C:ASN74
|
3.2
|
11.8
|
1.0
|
HB3
|
C:ASN74
|
3.3
|
13.0
|
1.0
|
HB2
|
C:ASN74
|
3.6
|
13.0
|
1.0
|
O
|
C:HOH435
|
3.6
|
38.9
|
1.0
|
CB
|
C:ASN74
|
3.8
|
10.8
|
1.0
|
HD21
|
C:ASN74
|
3.8
|
14.1
|
1.0
|
CB
|
C:ASN65
|
3.8
|
8.6
|
1.0
|
CG
|
C:ASN65
|
4.0
|
9.8
|
1.0
|
CG
|
C:ASN74
|
4.0
|
10.5
|
1.0
|
HB3
|
C:ASN65
|
4.1
|
10.3
|
1.0
|
O
|
C:HOH374
|
4.3
|
27.8
|
0.8
|
OD1
|
C:ASN65
|
4.4
|
9.8
|
1.0
|
O
|
C:HOH389
|
4.4
|
11.2
|
1.0
|
O
|
C:HOH303
|
4.4
|
40.0
|
0.9
|
ND2
|
C:ASN65
|
4.5
|
11.7
|
1.0
|
O
|
C:HOH440
|
4.6
|
44.2
|
1.0
|
HD22
|
C:ASN65
|
4.7
|
14.0
|
1.0
|
O
|
C:HOH457
|
4.7
|
27.6
|
0.6
|
O
|
C:HOH415
|
4.8
|
17.3
|
1.0
|
HD21
|
C:ASN65
|
4.9
|
14.0
|
1.0
|
O
|
C:HOH372
|
5.0
|
27.1
|
1.0
|
|
Chlorine binding site 3 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 3 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl203
b:20.4
occ:0.71
|
HZ3
|
C:LYS33
|
2.7
|
21.6
|
1.0
|
HE2
|
C:PHE38
|
2.9
|
10.6
|
1.0
|
HZ3
|
C:TRP123
|
3.0
|
15.8
|
1.0
|
HO1
|
C:EDO220
|
3.3
|
46.9
|
0.1
|
HD3
|
C:ARG5
|
3.3
|
16.6
|
1.0
|
HB2
|
C:ARG5
|
3.3
|
15.3
|
1.0
|
O1
|
C:EDO220
|
3.3
|
39.0
|
1.0
|
O
|
C:HOH423
|
3.5
|
44.6
|
1.0
|
HD3
|
C:LYS33
|
3.6
|
14.6
|
1.0
|
NZ
|
C:LYS33
|
3.6
|
18.0
|
1.0
|
CE2
|
C:PHE38
|
3.7
|
8.9
|
1.0
|
HE2
|
C:LYS33
|
3.8
|
19.0
|
1.0
|
O
|
C:HOH369
|
3.9
|
43.3
|
1.0
|
CZ3
|
C:TRP123
|
3.9
|
13.2
|
1.0
|
HZ1
|
C:LYS33
|
4.0
|
21.6
|
1.0
|
HZ2
|
C:LYS33
|
4.1
|
21.6
|
1.0
|
CE
|
C:LYS33
|
4.1
|
15.8
|
1.0
|
HZ
|
C:PHE38
|
4.2
|
9.5
|
1.0
|
CD
|
C:ARG5
|
4.2
|
13.8
|
1.0
|
CB
|
C:ARG5
|
4.2
|
12.7
|
1.0
|
O
|
C:HOH395
|
4.3
|
32.6
|
1.0
|
CD
|
C:LYS33
|
4.3
|
12.2
|
1.0
|
CZ
|
C:PHE38
|
4.4
|
7.9
|
1.0
|
HE
|
C:ARG5
|
4.5
|
17.2
|
1.0
|
HG3
|
C:ARG5
|
4.5
|
13.6
|
1.0
|
HE3
|
C:TRP123
|
4.5
|
13.3
|
1.0
|
HD2
|
C:PHE38
|
4.5
|
9.4
|
1.0
|
CG
|
C:ARG5
|
4.6
|
11.4
|
1.0
|
HB3
|
C:ARG5
|
4.6
|
15.3
|
1.0
|
CD2
|
C:PHE38
|
4.6
|
7.8
|
1.0
|
C1
|
C:EDO220
|
4.6
|
40.1
|
1.0
|
CE3
|
C:TRP123
|
4.7
|
11.1
|
1.0
|
HH2
|
C:TRP123
|
4.8
|
17.0
|
1.0
|
HD2
|
C:LYS33
|
4.8
|
14.6
|
1.0
|
NE
|
C:ARG5
|
4.8
|
14.3
|
1.0
|
HD2
|
C:ARG5
|
4.8
|
16.6
|
1.0
|
H11
|
C:EDO220
|
4.8
|
48.1
|
0.8
|
CH2
|
C:TRP123
|
4.9
|
14.2
|
1.0
|
H21
|
C:EDO220
|
4.9
|
48.9
|
0.6
|
|
Chlorine binding site 4 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 4 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl204
b:22.6
occ:0.68
|
HH11
|
C:ARG68
|
1.9
|
9.0
|
0.4
|
O
|
C:HOH462
|
2.3
|
11.8
|
0.3
|
HH11
|
C:ARG68
|
2.3
|
13.3
|
0.6
|
NH1
|
C:ARG68
|
2.6
|
7.5
|
0.4
|
HH12
|
C:ARG68
|
2.8
|
9.0
|
0.4
|
HD2
|
C:ARG68
|
2.9
|
12.2
|
0.6
|
NH1
|
C:ARG68
|
3.1
|
11.1
|
0.6
|
HD3
|
C:ARG68
|
3.2
|
9.9
|
0.4
|
HD2
|
C:ARG68
|
3.3
|
9.9
|
0.4
|
HH12
|
C:ARG68
|
3.4
|
13.3
|
0.6
|
CD
|
C:ARG68
|
3.6
|
8.3
|
0.4
|
CZ
|
C:ARG68
|
3.8
|
5.4
|
0.4
|
CD
|
C:ARG68
|
3.8
|
10.1
|
0.6
|
HH12
|
C:ARG45
|
4.1
|
34.0
|
0.4
|
HD3
|
C:ARG68
|
4.1
|
12.2
|
0.6
|
NE
|
C:ARG68
|
4.1
|
6.2
|
0.4
|
CZ
|
C:ARG68
|
4.2
|
9.2
|
0.6
|
HH22
|
C:ARG45
|
4.4
|
27.0
|
0.6
|
NE
|
C:ARG68
|
4.4
|
9.3
|
0.6
|
HH12
|
C:ARG45
|
4.4
|
14.2
|
0.6
|
NH1
|
C:ARG45
|
4.5
|
28.3
|
0.4
|
HH11
|
C:ARG45
|
4.6
|
34.0
|
0.4
|
HB2
|
C:ARG68
|
4.7
|
11.5
|
0.6
|
HB2
|
C:ARG68
|
4.8
|
10.5
|
0.4
|
HB3
|
C:ARG68
|
4.8
|
11.5
|
0.6
|
CG
|
C:ARG68
|
4.9
|
10.5
|
0.6
|
NH2
|
C:ARG68
|
4.9
|
6.0
|
0.4
|
HB3
|
C:ARG68
|
4.9
|
10.5
|
0.4
|
CG
|
C:ARG68
|
4.9
|
8.1
|
0.4
|
HG2
|
C:ARG68
|
5.0
|
12.6
|
0.6
|
HE
|
C:ARG68
|
5.0
|
7.4
|
0.4
|
HH22
|
C:ARG68
|
5.0
|
7.2
|
0.4
|
|
Chlorine binding site 5 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 5 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl205
b:9.7
occ:1.00
|
HH
|
C:TYR23
|
2.2
|
9.5
|
1.0
|
OH
|
C:TYR23
|
3.1
|
7.9
|
1.0
|
HE2
|
C:TYR23
|
3.2
|
8.3
|
1.0
|
O
|
C:HOH365
|
3.2
|
10.1
|
1.0
|
HA3
|
C:GLY104
|
3.4
|
9.1
|
1.0
|
CZ
|
C:TYR23
|
3.7
|
7.2
|
1.0
|
CE2
|
C:TYR23
|
3.7
|
6.9
|
1.0
|
HA2
|
C:GLY104
|
4.1
|
9.1
|
1.0
|
CA
|
C:GLY104
|
4.1
|
7.5
|
1.0
|
O
|
C:ARG21
|
4.6
|
9.8
|
1.0
|
N
|
C:GLY104
|
4.7
|
8.3
|
1.0
|
H
|
C:MET105
|
4.8
|
7.4
|
1.0
|
H
|
C:GLY104
|
4.8
|
9.9
|
1.0
|
HB3
|
C:ARG21
|
4.9
|
15.0
|
1.0
|
CE1
|
C:TYR23
|
4.9
|
7.0
|
1.0
|
CD2
|
C:TYR23
|
5.0
|
6.5
|
1.0
|
|
Chlorine binding site 6 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 6 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl206
b:13.3
occ:0.98
|
H
|
C:GLY26
|
2.4
|
8.7
|
1.0
|
HG
|
C:SER24
|
2.7
|
14.8
|
1.0
|
HA
|
C:GLN121
|
2.8
|
13.5
|
1.0
|
HG3
|
C:GLN121
|
2.9
|
34.3
|
0.5
|
HE21
|
C:GLN121
|
2.9
|
23.9
|
0.5
|
HA3
|
C:GLY26
|
3.0
|
9.1
|
1.0
|
HB2
|
C:SER24
|
3.0
|
12.5
|
1.0
|
OG
|
C:SER24
|
3.0
|
12.3
|
1.0
|
N
|
C:GLY26
|
3.2
|
7.2
|
1.0
|
HD11
|
C:ILE124
|
3.2
|
23.0
|
1.0
|
HB2
|
C:GLN121
|
3.3
|
13.3
|
0.5
|
NE2
|
C:GLN121
|
3.5
|
19.9
|
0.5
|
HG12
|
C:ILE124
|
3.5
|
17.3
|
1.0
|
HG23
|
C:VAL120
|
3.5
|
13.1
|
1.0
|
CB
|
C:SER24
|
3.5
|
10.4
|
1.0
|
HG2
|
C:GLN121
|
3.5
|
14.2
|
0.5
|
CA
|
C:GLY26
|
3.5
|
7.6
|
1.0
|
CA
|
C:GLN121
|
3.6
|
11.3
|
0.5
|
CA
|
C:GLN121
|
3.6
|
11.0
|
0.5
|
CG
|
C:GLN121
|
3.6
|
28.6
|
0.5
|
HD13
|
C:ILE124
|
3.7
|
23.0
|
1.0
|
CB
|
C:GLN121
|
3.8
|
11.1
|
0.5
|
CD1
|
C:ILE124
|
3.8
|
19.2
|
1.0
|
CD
|
C:GLN121
|
3.9
|
27.5
|
0.5
|
HE22
|
C:GLN121
|
4.0
|
23.9
|
0.5
|
N
|
C:GLN121
|
4.0
|
10.5
|
1.0
|
CB
|
C:GLN121
|
4.1
|
16.1
|
0.5
|
CG
|
C:GLN121
|
4.1
|
11.8
|
0.5
|
H
|
C:LEU25
|
4.1
|
9.6
|
1.0
|
CG1
|
C:ILE124
|
4.1
|
14.4
|
1.0
|
HB3
|
C:SER24
|
4.1
|
12.5
|
1.0
|
N
|
C:LEU25
|
4.2
|
8.0
|
1.0
|
H
|
C:ASN27
|
4.2
|
7.8
|
1.0
|
HA2
|
C:GLY26
|
4.2
|
9.1
|
1.0
|
HB3
|
C:GLN121
|
4.3
|
19.3
|
0.5
|
H
|
C:GLN121
|
4.3
|
12.6
|
1.0
|
HB3
|
C:LEU25
|
4.3
|
10.8
|
1.0
|
C
|
C:LEU25
|
4.3
|
7.8
|
1.0
|
C
|
C:SER24
|
4.3
|
7.7
|
1.0
|
HG3
|
C:GLN121
|
4.3
|
14.2
|
0.5
|
C
|
C:VAL120
|
4.4
|
9.8
|
1.0
|
O
|
C:VAL120
|
4.4
|
9.8
|
1.0
|
CG2
|
C:VAL120
|
4.4
|
10.9
|
1.0
|
HG2
|
C:GLN121
|
4.4
|
34.3
|
0.5
|
HG13
|
C:ILE124
|
4.5
|
17.3
|
1.0
|
C
|
C:GLY26
|
4.6
|
6.4
|
1.0
|
CA
|
C:SER24
|
4.6
|
8.8
|
1.0
|
HG21
|
C:VAL120
|
4.6
|
13.1
|
1.0
|
N
|
C:ASN27
|
4.7
|
6.5
|
1.0
|
HB3
|
C:GLN121
|
4.7
|
13.3
|
0.5
|
HD12
|
C:ILE124
|
4.7
|
23.0
|
1.0
|
CA
|
C:LEU25
|
4.7
|
8.1
|
1.0
|
O
|
C:SER24
|
4.7
|
8.5
|
1.0
|
C
|
C:GLN121
|
4.8
|
11.1
|
1.0
|
HG22
|
C:VAL120
|
4.9
|
13.1
|
1.0
|
HB2
|
C:GLN121
|
4.9
|
19.3
|
0.5
|
HG23
|
C:ILE124
|
5.0
|
14.2
|
1.0
|
HB
|
C:VAL120
|
5.0
|
11.7
|
1.0
|
|
Chlorine binding site 7 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 7 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl207
b:11.2
occ:0.99
|
H
|
C:THR69
|
2.4
|
9.8
|
1.0
|
O
|
C:HOH364
|
3.1
|
8.5
|
1.0
|
O
|
C:HOH414
|
3.2
|
18.1
|
0.7
|
O
|
C:HOH430
|
3.2
|
20.6
|
1.0
|
HA2
|
C:GLY67
|
3.2
|
10.9
|
1.0
|
N
|
C:THR69
|
3.2
|
8.2
|
1.0
|
H
|
C:GLY67
|
3.3
|
9.9
|
1.0
|
O
|
C:THR69
|
3.4
|
9.7
|
1.0
|
H
|
C:ARG68
|
3.4
|
10.7
|
1.0
|
N
|
C:ARG68
|
3.5
|
8.9
|
1.0
|
C
|
C:GLY67
|
3.5
|
9.0
|
1.0
|
O
|
C:HOH372
|
3.6
|
27.1
|
1.0
|
OG
|
C:SER72
|
3.6
|
11.5
|
1.0
|
CA
|
C:GLY67
|
3.6
|
9.1
|
1.0
|
HB
|
C:THR69
|
3.7
|
10.4
|
1.0
|
N
|
C:GLY67
|
3.7
|
8.2
|
1.0
|
OD1
|
C:ASN65
|
3.7
|
9.8
|
1.0
|
C
|
C:THR69
|
3.8
|
8.6
|
1.0
|
CA
|
C:THR69
|
3.9
|
8.1
|
1.0
|
O
|
C:HOH389
|
4.0
|
11.2
|
1.0
|
O
|
C:GLY67
|
4.1
|
11.3
|
1.0
|
H
|
C:ASP66
|
4.2
|
8.4
|
1.0
|
CB
|
C:THR69
|
4.3
|
8.7
|
1.0
|
OD1
|
C:ASP66
|
4.3
|
7.0
|
1.0
|
C
|
C:ARG68
|
4.3
|
9.8
|
1.0
|
CA
|
C:ARG68
|
4.3
|
11.4
|
0.4
|
O
|
C:HOH457
|
4.4
|
27.6
|
0.6
|
CA
|
C:ARG68
|
4.4
|
8.2
|
0.6
|
HG1
|
C:THR69
|
4.5
|
10.1
|
1.0
|
HA
|
C:PRO70
|
4.5
|
10.9
|
1.0
|
HA3
|
C:GLY67
|
4.5
|
10.9
|
1.0
|
HA
|
C:ARG68
|
4.6
|
13.7
|
1.0
|
H
|
C:SER72
|
4.6
|
15.3
|
1.0
|
N
|
C:PRO70
|
4.6
|
9.1
|
1.0
|
NA
|
C:NA218
|
4.7
|
9.0
|
1.0
|
C
|
C:ASP66
|
4.8
|
7.4
|
1.0
|
CB
|
C:SER72
|
4.8
|
11.7
|
1.0
|
HB3
|
C:SER72
|
4.8
|
14.0
|
1.0
|
HA
|
C:THR69
|
4.8
|
9.7
|
1.0
|
OG1
|
C:THR69
|
4.9
|
8.4
|
1.0
|
HA
|
C:ASN65
|
4.9
|
9.5
|
1.0
|
N
|
C:ASP66
|
4.9
|
7.0
|
1.0
|
CG
|
C:ASN65
|
4.9
|
9.8
|
1.0
|
|
Chlorine binding site 8 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 8 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl208
b:25.5
occ:1.00
|
H
|
C:ASN74
|
2.3
|
13.9
|
1.0
|
HE
|
C:ARG73
|
2.4
|
21.2
|
1.0
|
HB3
|
C:ARG73
|
3.1
|
15.8
|
1.0
|
N
|
C:ASN74
|
3.2
|
11.6
|
1.0
|
NE
|
C:ARG73
|
3.2
|
17.6
|
1.0
|
O
|
C:HOH356
|
3.3
|
36.8
|
1.0
|
HA
|
C:ARG73
|
3.4
|
15.1
|
1.0
|
HD23
|
C:LEU75
|
3.4
|
20.0
|
1.0
|
HD2
|
C:ARG73
|
3.5
|
20.1
|
1.0
|
HB3
|
C:ASN74
|
3.6
|
13.0
|
1.0
|
HH21
|
C:ARG73
|
3.6
|
22.0
|
1.0
|
C
|
C:ASN74
|
3.8
|
11.0
|
1.0
|
CD
|
C:ARG73
|
3.8
|
16.7
|
1.0
|
CB
|
C:ARG73
|
3.8
|
13.2
|
1.0
|
O
|
C:ASN74
|
3.8
|
11.8
|
1.0
|
CA
|
C:ARG73
|
3.9
|
12.6
|
1.0
|
CA
|
C:ASN74
|
3.9
|
10.6
|
1.0
|
C
|
C:ARG73
|
4.0
|
11.3
|
1.0
|
CZ
|
C:ARG73
|
4.2
|
16.5
|
1.0
|
NH2
|
C:ARG73
|
4.2
|
18.4
|
1.0
|
HA
|
C:LEU75
|
4.2
|
14.6
|
1.0
|
CB
|
C:ASN74
|
4.2
|
10.8
|
1.0
|
CD2
|
C:LEU75
|
4.3
|
16.6
|
1.0
|
N
|
C:LEU75
|
4.4
|
10.8
|
1.0
|
O
|
C:HOH303
|
4.4
|
40.0
|
0.9
|
CG
|
C:ARG73
|
4.5
|
15.7
|
1.0
|
HD21
|
C:LEU75
|
4.5
|
20.0
|
1.0
|
HG
|
C:LEU75
|
4.6
|
16.6
|
1.0
|
HB2
|
C:ARG73
|
4.6
|
15.8
|
1.0
|
HD3
|
C:ARG73
|
4.7
|
20.1
|
1.0
|
O
|
C:HOH374
|
4.7
|
27.8
|
0.8
|
HB2
|
C:ASN74
|
4.7
|
13.0
|
1.0
|
H
|
C:LEU75
|
4.8
|
12.9
|
1.0
|
HA
|
C:ASN74
|
4.8
|
12.7
|
1.0
|
CA
|
C:LEU75
|
4.8
|
12.2
|
1.0
|
HG3
|
C:ARG73
|
4.9
|
18.8
|
1.0
|
HD22
|
C:LEU75
|
5.0
|
20.0
|
1.0
|
HD21
|
C:ASN77
|
5.0
|
28.4
|
1.0
|
|
Chlorine binding site 9 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 9 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl209
b:18.1
occ:0.79
|
H
|
C:ILE88
|
2.5
|
10.6
|
1.0
|
HG12
|
C:ILE88
|
2.7
|
11.7
|
1.0
|
HA
|
C:ASP87
|
3.0
|
12.9
|
1.0
|
HE1
|
C:HIS15
|
3.1
|
21.0
|
1.0
|
O
|
C:HOH363
|
3.2
|
17.6
|
0.8
|
HB1
|
C:ALA11
|
3.3
|
11.6
|
1.0
|
N
|
C:ILE88
|
3.4
|
8.8
|
1.0
|
HZ
|
C:PHE3
|
3.4
|
11.9
|
1.0
|
O
|
C:HOH332
|
3.5
|
25.7
|
1.0
|
HG23
|
C:ILE88
|
3.5
|
13.0
|
1.0
|
CG1
|
C:ILE88
|
3.7
|
9.8
|
1.0
|
CA
|
C:ASP87
|
3.9
|
10.7
|
1.0
|
CE1
|
C:HIS15
|
3.9
|
17.5
|
1.0
|
HG13
|
C:ILE88
|
4.1
|
11.7
|
1.0
|
O
|
C:SER86
|
4.1
|
12.7
|
1.0
|
HB2
|
C:ALA11
|
4.1
|
11.6
|
1.0
|
C
|
C:ASP87
|
4.1
|
8.9
|
1.0
|
CB
|
C:ALA11
|
4.2
|
9.7
|
1.0
|
OD1
|
C:ASP87
|
4.2
|
15.3
|
1.0
|
CZ
|
C:PHE3
|
4.2
|
9.9
|
1.0
|
CB
|
C:ILE88
|
4.3
|
8.8
|
1.0
|
CG2
|
C:ILE88
|
4.3
|
10.8
|
1.0
|
HE2
|
C:PHE3
|
4.3
|
11.6
|
1.0
|
CA
|
C:ILE88
|
4.4
|
7.9
|
1.0
|
HD13
|
C:ILE88
|
4.6
|
13.2
|
1.0
|
CD1
|
C:ILE88
|
4.6
|
11.0
|
1.0
|
HO1
|
C:EDO221
|
4.6
|
18.1
|
0.4
|
CG
|
C:ASP87
|
4.7
|
17.4
|
1.0
|
H
|
C:THR89
|
4.7
|
10.4
|
1.0
|
HB3
|
C:ALA11
|
4.7
|
11.6
|
1.0
|
HD1
|
C:HIS15
|
4.7
|
19.1
|
1.0
|
ND1
|
C:HIS15
|
4.7
|
15.9
|
1.0
|
HD11
|
C:ILE88
|
4.7
|
13.2
|
1.0
|
CE2
|
C:PHE3
|
4.7
|
9.7
|
1.0
|
CB
|
C:ASP87
|
4.8
|
13.0
|
1.0
|
NE2
|
C:HIS15
|
4.8
|
21.2
|
1.0
|
HG21
|
C:ILE88
|
4.8
|
13.0
|
1.0
|
HE2
|
C:HIS15
|
4.9
|
25.5
|
1.0
|
N
|
C:ASP87
|
4.9
|
9.6
|
1.0
|
C
|
C:SER86
|
4.9
|
10.5
|
1.0
|
HG1
|
C:THR89
|
4.9
|
15.1
|
1.0
|
HB2
|
C:ASP87
|
5.0
|
15.6
|
1.0
|
HG22
|
C:ILE88
|
5.0
|
13.0
|
1.0
|
|
Chlorine binding site 10 out
of 17 in 6g8a
Go back to
Chlorine Binding Sites List in 6g8a
Chlorine binding site 10 out
of 17 in the Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Lysozyme Solved By Native Sad From A Dataset Collected in 5 Seconds at 1 A Wavelength with Jungfrau Detector within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl210
b:16.6
occ:0.67
|
H
|
C:LEU25
|
2.3
|
9.6
|
1.0
|
HB2
|
C:ASP18
|
2.8
|
18.5
|
1.0
|
O
|
C:HOH310
|
2.9
|
38.3
|
1.0
|
HA
|
C:SER24
|
2.9
|
10.6
|
1.0
|
HB2
|
C:LEU25
|
3.1
|
10.8
|
1.0
|
N
|
C:LEU25
|
3.1
|
8.0
|
1.0
|
HB2
|
C:SER24
|
3.2
|
12.5
|
1.0
|
HB2
|
C:ASN19
|
3.4
|
19.6
|
1.0
|
H
|
C:ASN19
|
3.5
|
15.6
|
1.0
|
CA
|
C:SER24
|
3.6
|
8.8
|
1.0
|
CB
|
C:ASP18
|
3.7
|
15.4
|
1.0
|
N
|
C:ASN19
|
3.7
|
13.0
|
1.0
|
CB
|
C:LEU25
|
3.8
|
9.0
|
1.0
|
HB3
|
C:LEU25
|
3.8
|
10.8
|
1.0
|
HA
|
C:ASP18
|
3.8
|
16.7
|
1.0
|
CB
|
C:SER24
|
3.9
|
10.4
|
1.0
|
C
|
C:SER24
|
3.9
|
7.7
|
1.0
|
C
|
C:ASP18
|
4.0
|
14.1
|
1.0
|
CA
|
C:LEU25
|
4.0
|
8.1
|
1.0
|
CA
|
C:ASP18
|
4.1
|
13.9
|
1.0
|
HB3
|
C:ASP18
|
4.1
|
18.5
|
1.0
|
HB3
|
C:SER24
|
4.2
|
12.5
|
1.0
|
CB
|
C:ASN19
|
4.3
|
16.4
|
1.0
|
HA
|
C:ASN19
|
4.4
|
16.1
|
1.0
|
CA
|
C:ASN19
|
4.4
|
13.4
|
1.0
|
HA
|
C:LEU25
|
4.5
|
9.7
|
1.0
|
OD2
|
C:ASP18
|
4.7
|
19.1
|
1.0
|
O
|
C:ASP18
|
4.7
|
15.6
|
1.0
|
HD22
|
C:LEU25
|
4.7
|
13.4
|
1.0
|
CG
|
C:ASP18
|
4.8
|
16.0
|
1.0
|
N
|
C:SER24
|
4.9
|
8.2
|
1.0
|
HD13
|
C:ILE124
|
4.9
|
23.0
|
1.0
|
H
|
C:GLY26
|
4.9
|
8.7
|
1.0
|
HB3
|
C:ASN19
|
5.0
|
19.6
|
1.0
|
CG
|
C:ASN19
|
5.0
|
19.8
|
1.0
|
|
Reference:
F.Leonarski,
S.Redford,
A.Mozzanica,
C.Lopez-Cuenca,
E.Panepucci,
K.Nass,
D.Ozerov,
L.Vera,
V.Olieric,
D.Buntschu,
R.Schneider,
G.Tinti,
E.Froejdh,
K.Diederichs,
O.Bunk,
B.Schmitt,
M.Wang.
Fast and Accurate Data Collection For Macromolecular Crystallography Using the Jungfrau Detector. Nat. Methods V. 15 799 2018.
ISSN: ESSN 1548-7105
PubMed: 30275593
DOI: 10.1038/S41592-018-0143-7
Page generated: Sat Jul 27 23:49:05 2024
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