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Chlorine in PDB 6gmc: 1.2 A Resolution Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole

Enzymatic activity of 1.2 A Resolution Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole

All present enzymatic activity of 1.2 A Resolution Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole:
1.1.3.15;

Protein crystallography data

The structure of 1.2 A Resolution Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole, PDB code: 6gmc was solved by S.Mackinnon, G.A.Bezerra, T.Krojer, C.Smee, C.H.Arrowsmith, E.Edwards, C.Bountra, U.Oppermann, P.E.Brennan, W.W.Yue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.31 / 1.20
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 97.348, 97.348, 80.363, 90.00, 90.00, 90.00
R / Rfree (%) 13.4 / 15.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.2 A Resolution Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole (pdb code 6gmc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 1.2 A Resolution Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole, PDB code: 6gmc:

Chlorine binding site 1 out of 1 in 6gmc

Go back to Chlorine Binding Sites List in 6gmc
Chlorine binding site 1 out of 1 in the 1.2 A Resolution Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.2 A Resolution Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:23.1
occ:0.50
 CL A:C7C506 0.0 23.1 0.5
C1 A:C7C506 1.8 17.1 0.5
CG A:PHE193 2.2 19.6 0.5
CB A:PHE193 2.5 19.7 0.5
CD1 A:PHE193 2.6 18.9 0.5
CD2 A:PHE193 2.6 18.5 0.5
CE A:MET183 2.7 16.6 0.5
C6 A:C7C506 2.7 16.7 0.5
C2 A:C7C506 2.8 15.9 0.5
CG A:TYR208 2.9 17.6 0.5
CD2 A:TYR208 3.0 16.3 0.5
CD1 A:TYR208 3.2 18.0 0.5
NE1 A:TRP110 3.2 16.6 0.5
CE1 A:PHE193 3.3 18.4 0.5
CE2 A:PHE193 3.4 17.2 0.5
CD1 A:LEU205 3.4 18.9 0.5
CE2 A:TYR208 3.4 16.6 0.5
CB A:TYR208 3.5 18.2 1.0
CD1 A:TRP110 3.6 16.2 0.5
CE1 A:TYR208 3.6 17.7 0.5
SD A:MET183 3.6 18.2 0.5
CZ A:PHE193 3.7 17.3 0.5
CZ A:TYR208 3.7 16.4 0.5
CA A:PHE193 3.7 20.8 0.5
CE2 A:TRP110 3.8 14.6 0.5
C5 A:C7C506 4.0 15.5 0.5
C3 A:C7C506 4.0 14.5 0.5
CG A:TRP110 4.3 15.5 0.5
CD2 A:TRP110 4.4 14.3 0.5
CZ2 A:TRP110 4.5 15.6 0.5
CG A:MET183 4.5 39.2 0.5
N A:PHE193 4.5 21.9 0.5
CG A:MET183 4.5 19.3 0.5
C4 A:C7C506 4.5 14.0 0.5
CD2 A:LEU205 4.6 22.1 0.5
OH A:TYR208 4.7 16.5 0.5
SD A:MET183 4.8 39.9 0.5
CG A:LEU205 4.8 18.1 0.5
C A:PHE193 4.9 21.4 0.5
CA A:TYR208 5.0 18.0 1.0
O A:PHE193 5.0 21.2 0.5

Reference:

S.Mackinnon, G.A.Bezerra, T.Krojer, C.Smee, C.H.Arrowsmith, E.Edwards, C.Bountra, U.Oppermann, P.E.Brennan, W.W.Yue. Structure of Human Hydroxyacid Oxidase 1 Bound with Fmn and Glycolate To Be Published.
Page generated: Sun Jul 28 00:01:50 2024

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