Chlorine in PDB 6gnp: Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)

The structure of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P), PDB code: 6gnp was solved by C.Grundstrom, J.Zhang, A.Olofsson, P.L.Andersson, A.E.Sauer-Eriksson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.70 / 2.02
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	71.171, 75.929, 107.014, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 21.9

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) (pdb code 6gnp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P), PDB code: 6gnp:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:56.9 occ:0.47 CL8 A:F4Z201 0.0 56.9 0.5 CL8 A:F4Z201 1.0 53.9 0.5 C07 A:F4Z201 1.6 50.9 0.5 C07 A:F4Z201 1.7 50.9 0.5 C01 A:F4Z201 2.1 52.0 0.5 C06 A:F4Z201 2.7 50.5 0.5 C01 A:F4Z201 2.7 46.6 0.5 C06 A:F4Z201 2.9 47.9 0.5 O C:HOH296 3.1 41.7 1.0 CL9 A:F4Z201 3.1 60.2 0.5 C02 A:F4Z201 3.4 47.9 0.5 CD1 C:LEU17 3.5 23.8 1.0 CB A:ALA108 3.7 15.8 1.0 CL9 A:F4Z201 3.8 60.7 0.5 C02 A:F4Z201 4.0 48.3 0.5 N05 A:F4Z201 4.0 47.5 0.5 N05 A:F4Z201 4.0 48.8 0.5 C03 A:F4Z201 4.3 47.8 0.5 C03 A:F4Z201 4.6 48.5 0.5 CG C:LEU17 4.6 20.0 1.0 CL1 A:F4Z201 4.7 51.0 0.5 CD1 A:LEU17 4.9 27.1 1.0 CB C:ALA108 5.0 19.2 1.0 CA A:ALA108 5.0 15.7 1.0

Chlorine binding site 2 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:53.9 occ:0.45 CL8 A:F4Z201 0.0 53.9 0.5 CL8 A:F4Z201 1.0 56.9 0.5 C07 A:F4Z201 1.7 50.9 0.5 C07 A:F4Z201 1.8 50.9 0.5 C01 A:F4Z201 2.2 46.6 0.5 C06 A:F4Z201 2.7 47.9 0.5 C01 A:F4Z201 2.7 52.0 0.5 O C:HOH296 2.8 41.7 1.0 C06 A:F4Z201 3.0 50.5 0.5 CL9 A:F4Z201 3.1 60.7 0.5 C02 A:F4Z201 3.6 48.3 0.5 CL9 A:F4Z201 3.9 60.2 0.5 C02 A:F4Z201 4.0 47.9 0.5 N05 A:F4Z201 4.0 48.8 0.5 CD1 A:LEU17 4.0 27.1 1.0 CB C:ALA108 4.2 19.2 1.0 N05 A:F4Z201 4.2 47.5 0.5 CD1 C:LEU17 4.3 23.8 1.0 CB A:ALA108 4.4 15.8 1.0 C03 A:F4Z201 4.4 48.5 0.5 C03 A:F4Z201 4.6 47.8 0.5 CL1 A:F4Z201 4.8 47.5 0.5 CG A:LEU17 4.9 21.8 1.0

Chlorine binding site 3 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:60.2 occ:0.47 CL9 A:F4Z201 0.0 60.2 0.5 C02 A:F4Z201 1.0 47.9 0.5 C01 A:F4Z201 1.2 52.0 0.5 CL1 A:F4Z201 1.5 51.0 0.5 C06 A:F4Z201 1.7 50.5 0.5 C03 A:F4Z201 2.4 47.8 0.5 C07 A:F4Z201 2.6 50.9 0.5 N05 A:F4Z201 2.6 47.5 0.5 C07 A:F4Z201 2.7 50.9 0.5 CL8 A:F4Z201 3.1 56.9 0.5 N05 A:F4Z201 3.3 48.8 0.5 C06 A:F4Z201 3.3 47.9 0.5 O04 A:F4Z201 3.3 51.3 0.5 CD1 C:LEU17 3.7 23.8 1.0 CL8 A:F4Z201 3.9 53.9 0.5 C03 A:F4Z201 3.9 48.5 0.5 O C:HOH281 3.9 49.5 1.0 C01 A:F4Z201 3.9 46.6 0.5 CB A:ALA108 4.2 15.8 1.0 C02 A:F4Z201 4.4 48.3 0.5 CD2 C:LEU17 4.4 23.9 1.0 CE C:LYS15 4.5 38.0 1.0 CG2 A:VAL121 4.6 24.1 1.0 CG C:LEU17 4.6 20.0 1.0 CG2 A:THR106 4.7 22.6 1.0 CB A:LYS15 4.8 22.1 1.0 O04 A:F4Z201 4.9 47.4 0.5 CG A:LYS15 4.9 29.1 1.0 CG C:LYS15 4.9 20.6 1.0 CL9 A:F4Z201 5.0 60.7 0.5

Chlorine binding site 4 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:60.7 occ:0.45 CL9 A:F4Z201 0.0 60.7 0.5 C02 A:F4Z201 1.1 48.3 0.5 C01 A:F4Z201 1.1 46.6 0.5 CL1 A:F4Z201 1.6 47.5 0.5 C06 A:F4Z201 1.7 47.9 0.5 C07 A:F4Z201 2.5 50.9 0.5 C03 A:F4Z201 2.6 48.5 0.5 N05 A:F4Z201 2.6 48.8 0.5 C07 A:F4Z201 2.7 50.9 0.5 CL8 A:F4Z201 3.1 53.9 0.5 C06 A:F4Z201 3.3 50.5 0.5 N05 A:F4Z201 3.3 47.5 0.5 O04 A:F4Z201 3.4 47.4 0.5 CD1 A:LEU17 3.8 27.1 1.0 CL8 A:F4Z201 3.8 56.9 0.5 C03 A:F4Z201 3.9 47.8 0.5 O A:HOH378 3.9 49.8 0.5 C01 A:F4Z201 3.9 52.0 0.5 CB C:ALA108 4.1 19.2 1.0 C02 A:F4Z201 4.4 47.9 0.5 CD2 A:LEU17 4.6 26.2 1.0 CG A:LEU17 4.6 21.8 1.0 CG C:LYS15 4.6 20.6 1.0 CE A:LYS15 4.7 37.2 1.0 CB C:LYS15 4.7 19.6 1.0 CG A:LYS15 4.7 29.1 1.0 CG2 C:VAL121 4.9 24.9 1.0 O04 A:F4Z201 4.9 51.3 0.5 CG2 C:THR106 4.9 25.3 1.0 CL9 A:F4Z201 5.0 60.2 0.5

Chlorine binding site 5 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:47.5 occ:0.47 CL1 A:F4Z201 0.0 47.5 0.5 CL9 A:F4Z201 1.6 60.7 0.5 C02 A:F4Z201 1.7 48.3 0.5 O A:HOH378 2.5 49.8 0.5 C01 A:F4Z201 2.7 46.6 0.5 C03 A:F4Z201 2.7 48.5 0.5 C06 A:F4Z201 2.9 47.9 0.5 O04 A:F4Z201 3.0 47.4 0.5 N05 A:F4Z201 3.1 48.8 0.5 CG2 C:THR106 3.8 25.3 1.0 O A:HOH378 3.9 49.8 0.5 N05 A:F4Z201 4.0 47.5 0.5 C07 A:F4Z201 4.0 50.9 0.5 C07 A:F4Z201 4.1 50.9 0.5 CE A:LYS15 4.3 37.2 1.0 CG2 C:VAL121 4.3 24.9 1.0 C06 A:F4Z201 4.4 50.5 0.5 C03 A:F4Z201 4.5 47.8 0.5 CD1 A:LEU17 4.5 27.1 1.0 CD2 A:LEU17 4.7 26.2 1.0 CL8 A:F4Z201 4.8 53.9 0.5 CB C:THR106 4.9 22.5 1.0 CB C:LYS15 4.9 19.6 1.0

Chlorine binding site 6 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:51.0 occ:0.45 CL1 A:F4Z201 0.0 51.0 0.5 CL9 A:F4Z201 1.5 60.2 0.5 C02 A:F4Z201 1.7 47.9 0.5 O C:HOH281 2.6 49.5 1.0 C01 A:F4Z201 2.7 52.0 0.5 C03 A:F4Z201 2.7 47.8 0.5 C06 A:F4Z201 2.9 50.5 0.5 O04 A:F4Z201 3.0 51.3 0.5 N05 A:F4Z201 3.1 47.5 0.5 CG2 A:THR106 3.8 22.6 1.0 N05 A:F4Z201 4.0 48.8 0.5 C07 A:F4Z201 4.0 50.9 0.5 C07 A:F4Z201 4.0 50.9 0.5 CG2 A:VAL121 4.1 24.1 1.0 CE C:LYS15 4.3 38.0 1.0 C06 A:F4Z201 4.4 47.9 0.5 C03 A:F4Z201 4.5 48.5 0.5 CB A:THR106 4.5 24.2 1.0 CD1 C:LEU17 4.6 23.8 1.0 CL8 A:F4Z201 4.7 56.9 0.5 CD2 C:LEU17 4.7 23.9 1.0 CB A:VAL121 4.7 25.2 1.0

Chlorine binding site 7 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl201 b:53.1 occ:0.64 CL8 D:F4Z201 0.0 53.1 0.6 CL8 D:F4Z201 0.8 49.1 0.4 C07 D:F4Z201 1.7 45.5 0.4 C07 D:F4Z201 1.7 45.6 0.6 C01 D:F4Z201 2.3 46.5 0.4 C06 D:F4Z201 2.7 44.3 0.6 C01 D:F4Z201 2.7 45.2 0.6 C06 D:F4Z201 2.9 45.6 0.4 O D:HOH379 3.0 38.6 1.0 CL9 D:F4Z201 3.1 53.8 0.6 O D:HOH359 3.4 35.4 1.0 C02 D:F4Z201 3.6 48.1 0.4 CL9 D:F4Z201 3.7 48.7 0.4 CB D:ALA108 3.9 22.9 1.0 C02 D:F4Z201 4.0 44.6 0.6 N05 D:F4Z201 4.0 44.2 0.6 CD1 B:LEU17 4.1 24.8 1.0 N05 D:F4Z201 4.1 45.1 0.4 C03 D:F4Z201 4.4 44.1 0.4 CD1 D:LEU17 4.5 24.1 1.0 C03 D:F4Z201 4.6 44.9 0.6 CB B:ALA108 4.7 16.2 1.0 CL1 D:F4Z201 4.8 51.7 0.4 CG B:LEU17 5.0 18.2 1.0

Chlorine binding site 8 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl201 b:49.1 occ:0.36 CL8 D:F4Z201 0.0 49.1 0.4 CL8 D:F4Z201 0.8 53.1 0.6 C07 D:F4Z201 1.6 45.6 0.6 C07 D:F4Z201 1.7 45.5 0.4 C01 D:F4Z201 2.2 45.2 0.6 C06 D:F4Z201 2.7 45.6 0.4 C01 D:F4Z201 2.7 46.5 0.4 C06 D:F4Z201 2.9 44.3 0.6 O D:HOH379 3.1 38.6 1.0 CL9 D:F4Z201 3.1 48.7 0.4 O D:HOH359 3.5 35.4 1.0 C02 D:F4Z201 3.5 44.6 0.6 CL9 D:F4Z201 3.7 53.8 0.6 CD1 D:LEU17 3.9 24.1 1.0 CB B:ALA108 4.0 16.2 1.0 C02 D:F4Z201 4.0 48.1 0.4 N05 D:F4Z201 4.0 45.1 0.4 N05 D:F4Z201 4.0 44.2 0.6 C03 D:F4Z201 4.3 44.9 0.6 C03 D:F4Z201 4.6 44.1 0.4 CB D:ALA108 4.6 22.9 1.0 CD1 B:LEU17 4.7 24.8 1.0 CG D:LEU17 4.8 12.2 1.0 CL1 D:F4Z201 4.8 54.2 0.6

Chlorine binding site 9 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl201 b:53.8 occ:0.64 CL9 D:F4Z201 0.0 53.8 0.6 C02 D:F4Z201 1.0 48.1 0.4 C01 D:F4Z201 1.0 46.5 0.4 CL1 D:F4Z201 1.7 51.7 0.4 C06 D:F4Z201 1.7 44.3 0.6 C07 D:F4Z201 2.4 45.5 0.4 C03 D:F4Z201 2.4 44.1 0.4 N05 D:F4Z201 2.6 44.2 0.6 C07 D:F4Z201 2.7 45.6 0.6 C06 D:F4Z201 3.1 45.6 0.4 CL8 D:F4Z201 3.1 53.1 0.6 N05 D:F4Z201 3.2 45.1 0.4 O04 D:F4Z201 3.3 42.6 0.4 CL8 D:F4Z201 3.7 49.1 0.4 O D:HOH370 3.7 54.9 0.6 CD1 B:LEU17 3.9 24.8 1.0 C03 D:F4Z201 3.9 44.9 0.6 C01 D:F4Z201 3.9 45.2 0.6 CB D:ALA108 4.0 22.9 1.0 C02 D:F4Z201 4.4 44.6 0.6 CB D:LYS15 4.4 20.5 1.0 CG D:LYS15 4.5 17.2 1.0 CE B:LYS15 4.6 24.8 1.0 CG B:LEU17 4.7 18.2 1.0 CG B:LYS15 4.8 22.3 1.0 CD2 B:LEU17 4.8 22.4 1.0 CG2 D:THR106 4.8 27.9 1.0 CL9 D:F4Z201 4.8 48.7 0.4 CG2 D:VAL121 4.8 31.4 1.0 O04 D:F4Z201 4.9 40.4 0.6

Chlorine binding site 10 out of 12 in the Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Sea Bream Transthyretin in Complex with 3,5,6- Trichloro-2-Pyridinol (TC2P) within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl201 b:48.7 occ:0.36 CL9 D:F4Z201 0.0 48.7 0.4 C02 D:F4Z201 0.9 44.6 0.6 C01 D:F4Z201 1.0 45.2 0.6 CL1 D:F4Z201 1.7 54.2 0.6 C06 D:F4Z201 1.7 45.6 0.4 C03 D:F4Z201 2.3 44.9 0.6 C07 D:F4Z201 2.4 45.6 0.6 N05 D:F4Z201 2.6 45.1 0.4 C07 D:F4Z201 2.7 45.5 0.4 C06 D:F4Z201 3.1 44.3 0.6 N05 D:F4Z201 3.1 44.2 0.6 CL8 D:F4Z201 3.1 49.1 0.4 O04 D:F4Z201 3.3 40.4 0.6 CL8 D:F4Z201 3.7 53.1 0.6 CD1 D:LEU17 3.9 24.1 1.0 C03 D:F4Z201 3.9 44.1 0.4 C01 D:F4Z201 3.9 46.5 0.4 CB B:ALA108 4.1 16.2 1.0 C02 D:F4Z201 4.4 48.1 0.4 CB B:LYS15 4.5 19.4 1.0 CE D:LYS15 4.5 31.8 1.0 CG B:LYS15 4.5 22.3 1.0 O D:HOH366 4.6 38.9 1.0 CD2 D:LEU17 4.7 25.4 1.0 CG D:LEU17 4.7 12.2 1.0 CG2 B:THR106 4.7 23.3 1.0 CL9 D:F4Z201 4.8 53.8 0.6 CG D:LYS15 4.8 17.2 1.0 CG2 B:VAL121 4.8 25.7 1.0 O04 D:F4Z201 4.9 42.6 0.4

J.Zhang, C.Grundstrom, K.Brannstrom, I.Iakovleva, M.Lindberg, A.Olofsson, P.L.Andersson, A.E.Sauer-Eriksson. Interspecies Variation Between Fish and Human Transthyretins in Their Binding of Thyroid-Disrupting Chemicals. Environ. Sci. Technol. V. 52 11865 2018.
ISSN: ISSN 1520-5851
PubMed: 30226982
DOI: 10.1021/ACS.EST.8B03581