Chlorine in PDB 6gok: X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain

Enzymatic activity of X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain

All present enzymatic activity of X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain:
3.1.27.5;

Protein crystallography data

The structure of X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain, PDB code: 6gok was solved by A.Merlino, G.Ferraro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	72.66 / 2.65
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	100.282, 32.805, 72.661, 90.00, 90.61, 90.00
*R / R_free (%)*	18.7 / 25.5

Other elements in 6gok:

The structure of X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain also contains other interesting chemical elements:

Palladium

(Pd)

4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain (pdb code 6gok). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain, PDB code: 6gok:

Chlorine binding site 1 out of 1 in 6gok

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Chlorine Binding Sites List in 6gok

Chlorine binding site 1 out of 1 in the X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the Adduct Formed Upon Reaction of Bovine Pancreatic Ribonuclease with A Pd(II) Complex Bearing N,N- Pyridylbenzimidazole Derivative with An Alkylated Sulphonate Side Chain within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl202 b:36.9 occ:0.50	CL2	B:F6Q202	0.0	36.9	0.5
	PD	B:F6Q202	2.7	44.0	0.5
	CE1	B:HIS119	3.1	57.1	1.0
	NAQ	B:F6Q202	3.2	49.4	0.5
	CAI	B:F6Q202	3.2	49.4	0.5
	ND1	B:HIS119	3.2	53.2	1.0
	O	B:PHE120	3.8	44.3	1.0
	NE2	B:HIS119	4.0	53.7	1.0
	CG	B:HIS119	4.1	51.0	1.0
	O	B:HOH308	4.3	49.3	1.0
	O	B:HOH321	4.3	43.3	1.0
	NAL	B:F6Q202	4.4	44.2	0.5
	CAH	B:F6Q202	4.4	48.9	0.5
	N	B:PHE120	4.4	37.0	1.0
	CAK	B:F6Q202	4.5	49.8	0.5
	CD2	B:HIS119	4.5	55.0	1.0
	C	B:PHE120	4.8	38.2	1.0
	CA	B:HIS119	4.8	42.6	1.0
	CAG	B:F6Q202	4.9	47.6	0.5
	NE2	B:HIS12	4.9	31.6	1.0

Reference:

G.Ferraro, A.M.Mansour, A.Merlino. Exploring the Interactions Between Model Proteins and Pd(II) or Pt(II) Compounds Bearing Charged N,N-Pyridylbenzimidazole Bidentate Ligands By X-Ray Crystallography. Dalton Trans V. 47 10130 2018.
ISSN: ESSN 1477-9234
PubMed: 30004541
DOI: 10.1039/C8DT01663A

Page generated: Sat Jul 12 14:39:21 2025

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