Chlorine in PDB 6h3v: Bunyamwera Virus Glycoprotein Gc Head Domain

Protein crystallography data

The structure of Bunyamwera Virus Glycoprotein Gc Head Domain, PDB code: 6h3v was solved by J.Hellert, A.Aebischer, K.Wernike, A.Haouz, E.Brocchi, S.Reiche, P.Guardado-Calvo, M.Beer, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.55 / 2.90
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 125.440, 125.440, 46.550, 90.00, 90.00, 120.00
R / Rfree (%) 16.7 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Bunyamwera Virus Glycoprotein Gc Head Domain (pdb code 6h3v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Bunyamwera Virus Glycoprotein Gc Head Domain, PDB code: 6h3v:

Chlorine binding site 1 out of 1 in 6h3v

Go back to Chlorine Binding Sites List in 6h3v
Chlorine binding site 1 out of 1 in the Bunyamwera Virus Glycoprotein Gc Head Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Bunyamwera Virus Glycoprotein Gc Head Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl804

b:94.6
occ:1.00
O A:PRO650 3.3 77.7 1.0
OH A:TYR568 3.4 80.0 1.0
OE2 A:GLU557 4.1 0.5 1.0
CE2 A:TYR568 4.1 80.0 1.0
CZ A:TYR568 4.2 78.2 1.0
CG A:GLU557 4.2 96.0 1.0
CD A:GLU557 4.4 0.3 1.0
C A:PRO650 4.5 65.2 1.0
CG A:PRO650 4.7 62.7 1.0
CD2 A:PHE560 4.7 87.6 1.0
CD2 A:LEU561 4.7 69.0 1.0
CG A:LEU561 4.8 67.1 1.0
CE2 A:PHE560 4.8 84.2 1.0
CE1 A:TYR567 4.8 67.9 1.0
CD1 A:LEU561 4.9 71.4 1.0

Reference:

J.Hellert, A.Aebischer, K.Wernike, A.Haouz, E.Brocchi, S.Reiche, P.Guardado-Calvo, M.Beer, F.A.Rey. Orthobunyavirus Spike Architecture and Recognition By Neutralizing Antibodies. Nat Commun V. 10 879 2019.
ISSN: ESSN 2041-1723
PubMed: 30787296
DOI: 10.1038/S41467-019-08832-8
Page generated: Sat Dec 12 13:03:41 2020

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