Chlorine in PDB 6h3x: Oropouche Virus Glycoprotein Gc Head Domain

The structure of Oropouche Virus Glycoprotein Gc Head Domain, PDB code: 6h3x was solved by J.Hellert, A.Aebischer, K.Wernike, A.Haouz, E.Brocchi, S.Reiche, P.Guardado-Calvo, M.Beer, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.90 / 2.09
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	104.638, 104.638, 133.504, 90.00, 90.00, 120.00
R / Rfree (%)	20.3 / 23.3

The binding sites of Chlorine atom in the Oropouche Virus Glycoprotein Gc Head Domain (pdb code 6h3x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Oropouche Virus Glycoprotein Gc Head Domain, PDB code: 6h3x:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Oropouche Virus Glycoprotein Gc Head Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Oropouche Virus Glycoprotein Gc Head Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl806 b:97.5 occ:1.00 OH A:TYR685 3.0 77.8 1.0 CA A:MET612 3.8 57.9 1.0 CB A:LYS614 3.9 83.8 1.0 CZ A:TYR685 4.0 67.5 1.0 N A:LYS614 4.1 66.5 1.0 CE1 A:TYR685 4.1 62.8 1.0 N A:MET612 4.2 59.4 1.0 O A:HOH919 4.2 84.2 1.0 N A:CYS613 4.2 49.7 1.0 C A:MET612 4.3 56.0 1.0 CA A:LYS614 4.7 74.2 1.0 CD A:LYS614 4.9 0.4 1.0 CB A:MET612 4.9 54.6 1.0

Chlorine binding site 2 out of 2 in the Oropouche Virus Glycoprotein Gc Head Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Oropouche Virus Glycoprotein Gc Head Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl807 b:0.3 occ:1.00 CB A:TYR685 3.5 67.9 1.0 CA A:TYR685 3.6 62.6 1.0 CD1 A:TYR685 3.7 67.8 1.0 N A:TYR685 3.7 62.9 1.0 O A:GLN682 3.8 73.7 1.0 CG A:TYR685 4.0 69.1 1.0 O A:ASP683 4.3 52.5 1.0 C A:ASP683 4.3 61.3 1.0 CA A:ASP683 4.3 70.3 1.0 C A:ASN684 4.7 62.7 1.0 CE1 A:TYR685 4.8 62.8 1.0 C A:GLN682 4.9 70.6 1.0 N A:ASN684 4.9 54.5 1.0 ND2 A:ASN575 4.9 89.5 1.0 C A:TYR685 5.0 52.8 1.0

J.Hellert, A.Aebischer, K.Wernike, A.Haouz, E.Brocchi, S.Reiche, P.Guardado-Calvo, M.Beer, F.A.Rey. Orthobunyavirus Spike Architecture and Recognition By Neutralizing Antibodies. Nat Commun V. 10 879 2019.
ISSN: ESSN 2041-1723
PubMed: 30787296
DOI: 10.1038/S41467-019-08832-8