Atomistry » Chlorine » PDB 6hf4-6hnb » 6hju
Atomistry »
  Chlorine »
    PDB 6hf4-6hnb »
      6hju »

Chlorine in PDB 6hju: The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage

Protein crystallography data

The structure of The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage, PDB code: 6hju was solved by A.Pica, G.Ferraro, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 90.30 / 1.58
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 180.530, 180.530, 180.530, 90.00, 90.00, 90.00
R / Rfree (%) 13.2 / 18.2

Other elements in 6hju:

The structure of The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage also contains other interesting chemical elements:

Cadmium (Cd) 7 atoms
Platinum (Pt) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage (pdb code 6hju). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage, PDB code: 6hju:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6hju

Go back to Chlorine Binding Sites List in 6hju
Chlorine binding site 1 out of 4 in the The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:31.4
occ:1.00
CD A:CD204 2.4 21.3 0.5
OD1 A:ASP80 3.7 18.7 1.0
CG A:ASP80 4.6 19.5 1.0
OD2 A:ASP80 4.7 21.5 1.0

Chlorine binding site 2 out of 4 in 6hju

Go back to Chlorine Binding Sites List in 6hju
Chlorine binding site 2 out of 4 in the The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:35.5
occ:0.45
CD A:CD201 2.8 34.9 0.3
N A:THR10 3.1 19.7 1.0
OG1 A:THR10 3.4 31.6 1.0
CA A:SER9 3.5 22.5 1.0
OE1 A:GLU11 3.5 28.3 1.0
O A:HOH430 3.7 60.8 1.0
CB A:SER9 3.7 23.5 1.0
CG2 A:THR10 3.7 29.1 1.0
O A:HOH456 3.8 0.2 1.0
C A:SER9 3.8 21.1 1.0
O A:HOH341 3.8 66.3 0.4
CB A:THR10 4.0 26.4 1.0
CA A:THR10 4.1 22.4 1.0
CD A:GLU11 4.6 31.9 1.0
O A:HOH360 4.6 74.8 1.0
N A:SER9 4.8 21.8 1.0
O A:TYR8 4.9 23.8 1.0
N A:GLU11 4.9 20.6 1.0
OE2 A:GLU11 4.9 42.4 1.0
OG A:SER9 5.0 23.2 1.0

Chlorine binding site 3 out of 4 in 6hju

Go back to Chlorine Binding Sites List in 6hju
Chlorine binding site 3 out of 4 in the The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:48.3
occ:0.40
CL A:CL218 0.0 48.3 0.4
CL A:CL218 3.0 37.1 0.3
OE2 A:GLU45 3.0 75.9 0.5
PT A:PT212 3.5 72.9 0.4
CG A:GLU45 3.5 36.0 0.5
CD A:GLU45 3.6 59.4 0.5
O A:HOH426 3.7 39.5 0.4
CD A:CD205 4.1 41.7 0.3
OE1 A:GLU45 4.5 55.7 0.5
CB A:GLU45 4.6 26.0 0.5
OE1 A:GLU45 4.6 67.0 0.5
CD A:GLU45 4.7 45.2 0.5
CB A:GLU45 5.0 24.3 0.5

Chlorine binding site 4 out of 4 in 6hju

Go back to Chlorine Binding Sites List in 6hju
Chlorine binding site 4 out of 4 in the The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The X-Ray Structure of the Horse Spleen Ferritin Nanocage Containing Pt, Obtained Upon Encapsulation of A Pt(II) Terpyridine Compound Within the Protein Cage within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:37.1
occ:0.30
CL A:CL218 0.0 37.1 0.3
CD A:CD205 2.2 41.7 0.3
CL A:CL218 3.0 48.3 0.4
SG A:CYS48 3.3 25.8 1.0
OE2 A:GLU45 3.5 40.1 0.5
OD1 A:ASP38 3.8 26.9 1.0
CD A:GLU45 3.9 45.2 0.5
CB A:CYS48 3.9 21.3 1.0
OE1 A:GLU45 4.1 55.7 0.5
CG A:ASP38 4.3 23.8 1.0
CG A:GLU45 4.3 36.0 0.5
CB A:ASP38 4.4 19.3 1.0
CB A:GLU45 4.6 26.0 0.5
O A:GLU45 4.7 20.3 0.5
O A:GLU45 4.7 20.8 0.5
CG A:GLU45 4.7 36.9 0.5
NH1 A:ARG52 4.8 51.2 1.0
CA A:GLU45 4.8 22.0 0.5
CA A:GLU45 5.0 21.4 0.5
PT A:PT212 5.0 72.9 0.4

Reference:

G.Ferraro, A.Pica, G.Petruk, F.Pane, A.Amoresano, A.Cilibrizzi, R.Vilar, D.M.Monti, A.Merlino. Preparation, Structure, Cytotoxicity and Mechanism of Action of Ferritin-Pt(II) Terpyridine Compound Nanocomposites. Nanomedicine (Lond) V. 13 2995 2018.
ISSN: ISSN 1748-6963
PubMed: 30501559
DOI: 10.2217/NNM-2018-0259
Page generated: Wed Oct 28 13:30:50 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy