Chlorine in PDB 6hnb: Crystal Structure of Aminotransferase ARO8 From Candida Albicans
Protein crystallography data
The structure of Crystal Structure of Aminotransferase ARO8 From Candida Albicans, PDB code: 6hnb
was solved by
A.Kiliszek,
K.Rzad,
W.Rypniewski,
S.Milewski,
I.Gabriel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.29 /
1.96
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.371,
102.258,
147.051,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.7 /
23.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Aminotransferase ARO8 From Candida Albicans
(pdb code 6hnb). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Aminotransferase ARO8 From Candida Albicans, PDB code: 6hnb:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 6hnb
Go back to
Chlorine Binding Sites List in 6hnb
Chlorine binding site 1 out
of 4 in the Crystal Structure of Aminotransferase ARO8 From Candida Albicans
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Aminotransferase ARO8 From Candida Albicans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl503
b:25.4
occ:1.00
|
O
|
A:HOH855
|
3.1
|
31.0
|
1.0
|
O
|
A:HOH774
|
3.1
|
19.0
|
1.0
|
N
|
A:SER223
|
3.3
|
15.0
|
1.0
|
ND2
|
A:ASN386
|
3.5
|
29.1
|
1.0
|
CA
|
A:SER222
|
3.6
|
17.4
|
1.0
|
C
|
A:SER222
|
3.9
|
16.5
|
1.0
|
O
|
A:SER223
|
4.0
|
17.7
|
1.0
|
CD1
|
A:PHE188
|
4.0
|
18.6
|
1.0
|
CB
|
A:SER222
|
4.0
|
17.6
|
1.0
|
CA
|
A:PHE188
|
4.3
|
17.0
|
1.0
|
O
|
A:GLU187
|
4.3
|
19.9
|
1.0
|
CA
|
A:SER223
|
4.3
|
16.0
|
1.0
|
CG
|
A:ASN386
|
4.5
|
29.9
|
1.0
|
C
|
A:SER223
|
4.6
|
16.9
|
1.0
|
CG2
|
A:VAL389
|
4.6
|
20.7
|
1.0
|
O
|
A:GLY221
|
4.6
|
15.1
|
1.0
|
CB
|
A:SER223
|
4.6
|
16.8
|
1.0
|
OD1
|
A:ASN386
|
4.7
|
30.6
|
1.0
|
CB
|
A:PHE188
|
4.7
|
19.5
|
1.0
|
N
|
A:SER222
|
4.7
|
17.3
|
1.0
|
O
|
A:PHE188
|
4.7
|
14.8
|
1.0
|
CE1
|
A:PHE188
|
4.8
|
20.4
|
1.0
|
OG
|
A:SER223
|
4.8
|
17.8
|
1.0
|
CG
|
A:PHE188
|
4.8
|
19.7
|
1.0
|
C
|
A:PHE188
|
4.9
|
15.7
|
1.0
|
N
|
A:VAL389
|
5.0
|
17.0
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 6hnb
Go back to
Chlorine Binding Sites List in 6hnb
Chlorine binding site 2 out
of 4 in the Crystal Structure of Aminotransferase ARO8 From Candida Albicans
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Aminotransferase ARO8 From Candida Albicans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl504
b:26.0
occ:1.00
|
O
|
A:HOH978
|
2.7
|
40.5
|
1.0
|
O
|
A:HOH803
|
3.0
|
23.1
|
1.0
|
OH
|
A:TYR164
|
3.0
|
18.6
|
1.0
|
O
|
A:HOH794
|
3.1
|
18.3
|
1.0
|
O
|
A:HOH921
|
3.2
|
41.2
|
1.0
|
CE1
|
A:TYR164
|
3.8
|
18.9
|
1.0
|
CZ
|
A:TYR164
|
3.9
|
18.9
|
1.0
|
CB
|
A:SER435
|
4.0
|
17.4
|
1.0
|
CA
|
A:SER435
|
4.0
|
17.1
|
1.0
|
N
|
A:SER435
|
4.2
|
18.1
|
1.0
|
CD2
|
A:LEU414
|
4.5
|
29.2
|
1.0
|
C
|
A:GLY434
|
4.7
|
16.8
|
1.0
|
O
|
A:HIS459
|
4.7
|
20.1
|
1.0
|
OE2
|
A:GLU417
|
4.8
|
21.8
|
1.0
|
CE
|
A:LYS457
|
4.9
|
50.8
|
1.0
|
CE1
|
A:PHE461
|
4.9
|
15.5
|
1.0
|
CA
|
A:ILE460
|
4.9
|
18.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 6hnb
Go back to
Chlorine Binding Sites List in 6hnb
Chlorine binding site 3 out
of 4 in the Crystal Structure of Aminotransferase ARO8 From Candida Albicans
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Aminotransferase ARO8 From Candida Albicans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl503
b:48.5
occ:1.00
|
ND1
|
B:HIS349
|
3.0
|
21.0
|
1.0
|
ND1
|
B:HIS121
|
3.1
|
16.1
|
1.0
|
SD
|
B:MET124
|
3.7
|
27.0
|
1.0
|
CB
|
B:HIS121
|
3.7
|
17.4
|
1.0
|
CE
|
B:MET124
|
3.8
|
26.5
|
1.0
|
CG
|
B:HIS121
|
3.8
|
17.6
|
1.0
|
CG
|
B:HIS349
|
3.8
|
21.9
|
1.0
|
CE1
|
B:HIS349
|
3.9
|
20.4
|
1.0
|
CB
|
B:HIS349
|
3.9
|
21.4
|
1.0
|
CD2
|
B:TYR352
|
3.9
|
18.9
|
1.0
|
CA
|
B:HIS121
|
4.0
|
18.1
|
1.0
|
O
|
B:HIS349
|
4.0
|
20.5
|
1.0
|
CA
|
B:HIS349
|
4.1
|
21.9
|
1.0
|
CG
|
B:LEU353
|
4.1
|
24.9
|
1.0
|
CE1
|
B:HIS121
|
4.2
|
17.3
|
1.0
|
CD2
|
B:LEU353
|
4.3
|
24.7
|
1.0
|
C
|
B:HIS349
|
4.6
|
20.8
|
1.0
|
CB
|
B:TYR352
|
4.6
|
18.8
|
1.0
|
CD1
|
B:LEU353
|
4.6
|
24.3
|
1.0
|
CG
|
B:TYR352
|
4.8
|
18.5
|
1.0
|
CE2
|
B:TYR352
|
4.8
|
18.3
|
1.0
|
N
|
B:HIS121
|
4.9
|
17.6
|
1.0
|
CZ
|
B:PHE117
|
4.9
|
23.6
|
1.0
|
N
|
B:LEU353
|
5.0
|
18.8
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 6hnb
Go back to
Chlorine Binding Sites List in 6hnb
Chlorine binding site 4 out
of 4 in the Crystal Structure of Aminotransferase ARO8 From Candida Albicans
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Aminotransferase ARO8 From Candida Albicans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl504
b:32.5
occ:1.00
|
O
|
B:HOH997
|
2.7
|
28.7
|
1.0
|
O
|
B:HOH648
|
3.0
|
29.5
|
1.0
|
O
|
B:HOH750
|
3.0
|
17.7
|
1.0
|
OH
|
B:TYR164
|
3.1
|
24.7
|
1.0
|
CB
|
B:SER435
|
3.8
|
14.9
|
1.0
|
CE1
|
B:TYR164
|
3.8
|
20.8
|
1.0
|
CZ
|
B:TYR164
|
3.9
|
22.1
|
1.0
|
CA
|
B:SER435
|
3.9
|
16.1
|
1.0
|
N
|
B:SER435
|
4.2
|
16.8
|
1.0
|
CD2
|
B:LEU414
|
4.4
|
27.3
|
1.0
|
C
|
B:GLY434
|
4.7
|
16.8
|
1.0
|
OE2
|
B:GLU417
|
4.7
|
19.7
|
1.0
|
O
|
B:HIS459
|
4.7
|
26.9
|
1.0
|
CE1
|
B:PHE461
|
4.9
|
15.8
|
1.0
|
CA
|
B:ILE460
|
4.9
|
20.7
|
1.0
|
CD1
|
B:PHE461
|
5.0
|
15.5
|
1.0
|
|
Reference:
A.Kiliszek,
W.Rypniewski,
K.Rzad,
S.Milewski,
I.Gabriel.
Crystal Structures of Aminotransferases ARO8 and ARO9 From Candida Albicans and Structural Insights Into Their Properties. J.Struct.Biol. V. 205 26 2019.
ISSN: ESSN 1095-8657
PubMed: 30742897
DOI: 10.1016/J.JSB.2019.02.001
Page generated: Sun Jul 28 00:58:52 2024
|