Chlorine in PDB 6hrl: Crystal Structure of the Kelch Domain of Human KLHL17
Protein crystallography data
The structure of Crystal Structure of the Kelch Domain of Human KLHL17, PDB code: 6hrl
was solved by
Z.Chen,
E.Williams,
F.J.Sorrell,
J.A.Newman,
L.Shrestha,
N.Burgess-Brown,
F.Von Delft,
F.Arrowsmith,
C.H.Edwards,
C.Bountra,
A.N.Bullock,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
62.50 /
2.60
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.353,
118.774,
124.991,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.7 /
26.9
|
Other elements in 6hrl:
The structure of Crystal Structure of the Kelch Domain of Human KLHL17 also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of the Kelch Domain of Human KLHL17
(pdb code 6hrl). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the
Crystal Structure of the Kelch Domain of Human KLHL17, PDB code: 6hrl:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 11 in 6hrl
Go back to
Chlorine Binding Sites List in 6hrl
Chlorine binding site 1 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl705
b:84.5
occ:1.00
|
NE
|
A:ARG517
|
3.6
|
45.8
|
1.0
|
NH2
|
A:ARG517
|
3.9
|
46.9
|
1.0
|
CZ
|
A:ARG517
|
4.3
|
45.8
|
1.0
|
O
|
A:HOH901
|
4.4
|
44.0
|
1.0
|
CD
|
A:ARG517
|
4.6
|
44.8
|
1.0
|
|
Chlorine binding site 2 out
of 11 in 6hrl
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Chlorine Binding Sites List in 6hrl
Chlorine binding site 2 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl706
b:84.6
occ:1.00
|
NH2
|
A:ARG598
|
2.8
|
45.1
|
1.0
|
NE1
|
A:TRP576
|
3.1
|
49.3
|
1.0
|
CZ
|
A:ARG598
|
3.9
|
45.4
|
1.0
|
CD1
|
A:TRP576
|
4.0
|
49.2
|
1.0
|
CE2
|
A:TRP576
|
4.2
|
48.4
|
1.0
|
NH1
|
A:ARG598
|
4.4
|
45.8
|
1.0
|
O
|
A:ASP574
|
4.5
|
50.6
|
1.0
|
CZ2
|
A:TRP576
|
4.5
|
48.0
|
1.0
|
OD2
|
A:ASP574
|
4.9
|
55.1
|
1.0
|
NE
|
A:ARG598
|
4.9
|
45.3
|
1.0
|
|
Chlorine binding site 3 out
of 11 in 6hrl
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Chlorine Binding Sites List in 6hrl
Chlorine binding site 3 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl707
b:90.5
occ:1.00
|
NH1
|
A:ARG611
|
3.3
|
53.6
|
1.0
|
NH2
|
A:ARG611
|
3.4
|
54.5
|
1.0
|
O
|
A:HOH812
|
3.7
|
26.9
|
1.0
|
CZ
|
A:ARG611
|
3.8
|
54.3
|
1.0
|
O
|
A:HOH805
|
4.3
|
49.9
|
1.0
|
O
|
A:HOH810
|
4.5
|
45.2
|
1.0
|
N
|
B:GLY337
|
4.6
|
30.1
|
1.0
|
OG
|
A:SER587
|
4.7
|
56.5
|
1.0
|
CD1
|
B:LEU623
|
4.8
|
62.5
|
1.0
|
|
Chlorine binding site 4 out
of 11 in 6hrl
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Chlorine Binding Sites List in 6hrl
Chlorine binding site 4 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl708
b:61.7
occ:1.00
|
O
|
A:HOH898
|
2.3
|
69.3
|
1.0
|
N
|
A:HIS494
|
3.5
|
46.4
|
1.0
|
CA
|
A:SER493
|
3.9
|
48.2
|
1.0
|
CD2
|
A:HIS494
|
3.9
|
47.6
|
1.0
|
CB
|
A:SER493
|
4.2
|
48.4
|
1.0
|
C
|
A:SER493
|
4.2
|
47.3
|
1.0
|
CB
|
A:HIS494
|
4.4
|
45.2
|
1.0
|
CA
|
A:HIS494
|
4.5
|
45.1
|
1.0
|
CG
|
A:HIS494
|
4.5
|
46.4
|
1.0
|
O
|
A:SER492
|
4.5
|
49.1
|
1.0
|
OG
|
A:SER493
|
4.6
|
49.9
|
1.0
|
O
|
A:HIS494
|
4.7
|
45.2
|
1.0
|
NH1
|
A:ARG517
|
4.7
|
44.6
|
1.0
|
CD
|
A:ARG517
|
4.8
|
44.8
|
1.0
|
CZ
|
A:ARG517
|
4.9
|
45.8
|
1.0
|
NE
|
A:ARG517
|
4.9
|
45.8
|
1.0
|
O
|
A:ASP537
|
5.0
|
48.8
|
1.0
|
|
Chlorine binding site 5 out
of 11 in 6hrl
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Chlorine Binding Sites List in 6hrl
Chlorine binding site 5 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl709
b:76.7
occ:1.00
|
O
|
A:HOH867
|
2.8
|
48.9
|
1.0
|
N
|
A:ASP480
|
3.1
|
43.2
|
1.0
|
CA
|
A:ASP480
|
3.8
|
44.2
|
1.0
|
C
|
A:LEU479
|
4.0
|
41.7
|
1.0
|
OD1
|
A:ASP480
|
4.0
|
45.4
|
1.0
|
CA
|
A:LEU479
|
4.1
|
40.1
|
1.0
|
CD1
|
A:LEU479
|
4.4
|
39.6
|
1.0
|
N
|
A:GLY481
|
4.5
|
43.5
|
1.0
|
O
|
A:THR478
|
4.5
|
37.8
|
1.0
|
C
|
A:ASP480
|
4.7
|
45.2
|
1.0
|
CG
|
A:ASP480
|
4.7
|
45.1
|
1.0
|
N
|
A:LEU479
|
4.8
|
39.3
|
1.0
|
CB
|
A:ASP480
|
4.9
|
44.7
|
1.0
|
C
|
A:THR478
|
4.9
|
37.7
|
1.0
|
|
Chlorine binding site 6 out
of 11 in 6hrl
Go back to
Chlorine Binding Sites List in 6hrl
Chlorine binding site 6 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl710
b:62.9
occ:1.00
|
O
|
A:HOH880
|
3.1
|
35.5
|
1.0
|
N
|
A:VAL525
|
3.5
|
37.0
|
1.0
|
CA
|
A:ALA524
|
3.7
|
36.4
|
1.0
|
CB
|
A:ALA524
|
3.7
|
38.0
|
1.0
|
C
|
A:ALA524
|
4.2
|
35.8
|
1.0
|
N
|
A:ALA572
|
4.2
|
35.9
|
1.0
|
O
|
A:VAL525
|
4.3
|
38.6
|
1.0
|
CB
|
A:ALA572
|
4.5
|
38.8
|
1.0
|
O
|
A:HOH830
|
4.5
|
59.1
|
1.0
|
CA
|
A:VAL525
|
4.6
|
36.8
|
1.0
|
CB
|
A:VAL525
|
4.7
|
36.3
|
1.0
|
CA
|
A:VAL571
|
4.8
|
34.8
|
1.0
|
O
|
A:VAL523
|
4.8
|
36.2
|
1.0
|
CG2
|
A:VAL571
|
4.9
|
36.9
|
1.0
|
C
|
A:VAL525
|
4.9
|
37.8
|
1.0
|
C
|
A:VAL571
|
5.0
|
35.8
|
1.0
|
O
|
A:LEU570
|
5.0
|
34.2
|
1.0
|
|
Chlorine binding site 7 out
of 11 in 6hrl
Go back to
Chlorine Binding Sites List in 6hrl
Chlorine binding site 7 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl711
b:63.0
occ:1.00
|
O
|
A:PRO409
|
3.5
|
44.1
|
1.0
|
OH
|
A:TYR407
|
3.7
|
40.9
|
1.0
|
CB
|
A:ASN412
|
4.3
|
42.3
|
1.0
|
OD1
|
A:ASN412
|
4.4
|
41.6
|
1.0
|
C
|
A:PRO409
|
4.4
|
43.9
|
1.0
|
CG
|
A:ASN412
|
4.5
|
42.0
|
1.0
|
CA
|
A:PRO409
|
4.6
|
42.7
|
1.0
|
CB
|
A:PRO409
|
4.8
|
42.5
|
1.0
|
CA
|
A:ASN412
|
4.8
|
42.4
|
1.0
|
CZ
|
A:TYR407
|
4.8
|
40.2
|
1.0
|
CG1
|
A:VAL370
|
4.9
|
42.0
|
1.0
|
|
Chlorine binding site 8 out
of 11 in 6hrl
Go back to
Chlorine Binding Sites List in 6hrl
Chlorine binding site 8 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl712
b:35.0
occ:1.00
|
OG
|
A:SER614
|
3.3
|
49.4
|
1.0
|
OG
|
A:SER520
|
3.3
|
44.1
|
1.0
|
NH1
|
A:ARG475
|
3.8
|
41.4
|
1.0
|
NH2
|
A:ARG475
|
3.8
|
41.0
|
1.0
|
CB
|
A:SER614
|
4.1
|
49.3
|
1.0
|
CD1
|
A:TYR473
|
4.1
|
43.6
|
1.0
|
CB
|
A:SER520
|
4.3
|
43.9
|
1.0
|
CZ
|
A:ARG475
|
4.3
|
40.7
|
1.0
|
CB
|
A:THR567
|
4.3
|
48.6
|
1.0
|
CG2
|
A:THR567
|
4.4
|
50.1
|
1.0
|
CA
|
A:CYS426
|
4.5
|
41.4
|
1.0
|
CA
|
A:THR567
|
4.5
|
46.7
|
1.0
|
CA
|
A:SER614
|
4.5
|
48.9
|
1.0
|
CB
|
A:ARG379
|
4.5
|
42.4
|
1.0
|
CG
|
A:ARG379
|
4.6
|
43.1
|
1.0
|
CA
|
A:ARG379
|
4.6
|
41.7
|
1.0
|
CB
|
A:CYS426
|
4.7
|
42.2
|
1.0
|
CA
|
A:SER520
|
4.7
|
41.7
|
1.0
|
CE1
|
A:TYR473
|
4.9
|
44.5
|
1.0
|
SG
|
A:CYS426
|
4.9
|
43.1
|
1.0
|
CA
|
A:TYR473
|
4.9
|
41.2
|
1.0
|
CB
|
A:TYR473
|
5.0
|
41.7
|
1.0
|
|
Chlorine binding site 9 out
of 11 in 6hrl
Go back to
Chlorine Binding Sites List in 6hrl
Chlorine binding site 9 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl705
b:50.6
occ:1.00
|
OG
|
B:SER520
|
3.5
|
51.8
|
1.0
|
NH2
|
B:ARG475
|
3.7
|
44.2
|
1.0
|
OG
|
B:SER614
|
3.8
|
45.3
|
1.0
|
NH1
|
B:ARG475
|
3.9
|
44.7
|
1.0
|
CD1
|
B:TYR473
|
4.2
|
45.3
|
1.0
|
CB
|
B:THR567
|
4.2
|
33.7
|
1.0
|
CG2
|
B:THR567
|
4.2
|
33.6
|
1.0
|
CZ
|
B:ARG475
|
4.3
|
44.3
|
1.0
|
CB
|
B:SER520
|
4.3
|
48.4
|
1.0
|
CB
|
B:ARG379
|
4.3
|
42.1
|
1.0
|
CG
|
B:ARG379
|
4.4
|
43.5
|
1.0
|
CB
|
B:SER614
|
4.4
|
43.7
|
1.0
|
CA
|
B:ARG379
|
4.4
|
41.1
|
1.0
|
CA
|
B:THR567
|
4.4
|
33.2
|
1.0
|
CA
|
B:CYS426
|
4.5
|
43.1
|
1.0
|
CA
|
B:SER614
|
4.7
|
43.7
|
1.0
|
CB
|
B:CYS426
|
4.7
|
43.3
|
1.0
|
CA
|
B:SER520
|
4.8
|
46.0
|
1.0
|
SG
|
B:CYS426
|
4.8
|
43.6
|
1.0
|
CB
|
B:TYR473
|
4.9
|
41.6
|
1.0
|
CA
|
B:TYR473
|
4.9
|
42.6
|
1.0
|
CE1
|
B:TYR473
|
4.9
|
46.5
|
1.0
|
|
Chlorine binding site 10 out
of 11 in 6hrl
Go back to
Chlorine Binding Sites List in 6hrl
Chlorine binding site 10 out
of 11 in the Crystal Structure of the Kelch Domain of Human KLHL17
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of the Kelch Domain of Human KLHL17 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl706
b:72.4
occ:1.00
|
N
|
B:HIS494
|
3.1
|
42.1
|
1.0
|
CD2
|
B:HIS494
|
3.8
|
45.2
|
1.0
|
CB
|
B:HIS494
|
3.8
|
41.4
|
1.0
|
CA
|
B:SER493
|
3.9
|
44.0
|
1.0
|
CA
|
B:HIS494
|
4.0
|
40.8
|
1.0
|
C
|
B:SER493
|
4.0
|
42.7
|
1.0
|
O
|
B:HIS494
|
4.1
|
39.2
|
1.0
|
CG
|
B:HIS494
|
4.2
|
43.2
|
1.0
|
CB
|
B:SER493
|
4.2
|
43.6
|
1.0
|
O
|
B:HOH806
|
4.3
|
38.6
|
1.0
|
CD
|
B:ARG517
|
4.4
|
41.9
|
1.0
|
O
|
B:ASP537
|
4.4
|
45.9
|
1.0
|
C
|
B:HIS494
|
4.5
|
39.3
|
1.0
|
NH1
|
B:ARG517
|
4.6
|
42.4
|
1.0
|
OG
|
B:SER493
|
4.8
|
44.9
|
1.0
|
O
|
B:SER492
|
4.9
|
45.1
|
1.0
|
NE
|
B:ARG517
|
4.9
|
42.4
|
1.0
|
CZ
|
B:ARG517
|
5.0
|
42.6
|
1.0
|
CA
|
B:GLY538
|
5.0
|
49.4
|
1.0
|
|
Reference:
Z.Chen,
E.Williams,
F.J.Sorrell,
J.A.Newman,
L.Shrestha,
N.Burgess-Brown,
F.Von Delft,
F.Arrowsmith,
C.H.Edwards,
C.Bountra,
A.N.Bullock.
Crystal Structure of the Kelch Domain of Human KLHL17 To Be Published.
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