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Chlorine in PDB 6i36: Sixty Minutes Iron Loaded Frog M Ferritin

Enzymatic activity of Sixty Minutes Iron Loaded Frog M Ferritin

All present enzymatic activity of Sixty Minutes Iron Loaded Frog M Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Sixty Minutes Iron Loaded Frog M Ferritin, PDB code: 6i36 was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.64 / 1.59
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 184.200, 184.200, 184.200, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 20.5

Other elements in 6i36:

The structure of Sixty Minutes Iron Loaded Frog M Ferritin also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Iron (Fe) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Chlorine atom in the Sixty Minutes Iron Loaded Frog M Ferritin (pdb code 6i36). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 15 binding sites of Chlorine where determined in the Sixty Minutes Iron Loaded Frog M Ferritin, PDB code: 6i36:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 15 in 6i36

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Chlorine binding site 1 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:16.4
occ:1.00
 O A:HOH529 3.0 10.9 1.0
O A:HOH639 3.1 25.6 1.0
O A:HOH493 3.1 22.8 1.0
O A:HOH457 3.3 27.8 1.0
ND2 A:ASN17 3.3 6.5 1.0
CB A:ASN17 3.7 6.5 1.0
O A:HOH637 4.0 31.1 1.0
CA A:ALA14 4.0 6.5 1.0
CG A:ASN17 4.0 6.4 1.0
CB A:VAL77 4.0 7.5 1.0
CB A:ALA14 4.2 6.5 1.0
O A:ALA14 4.2 6.7 1.0
CG2 A:VAL77 4.4 7.8 1.0
CG1 A:VAL77 4.4 7.9 1.0
C A:ALA14 4.6 6.5 1.0
O A:HOH374 4.7 10.6 1.0

Chlorine binding site 2 out of 15 in 6i36

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Chlorine binding site 2 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:20.1
occ:1.00
 O A:HOH388 2.9 14.7 1.0
O A:HOH420 3.1 6.7 1.0
O A:HOH530 3.4 29.8 1.0
O A:HOH307 3.9 21.1 1.0
CB A:ASP80 4.0 6.2 1.0
O A:HOH599 4.0 26.5 1.0
CE A:LYS82 4.1 10.0 1.0
OD2 A:ASP80 4.1 6.2 1.0
NZ A:LYS82 4.1 11.1 1.0
CG A:ASP80 4.3 6.1 1.0
N A:ASP80 4.3 6.2 1.0
CB A:GLN79 4.6 7.5 1.0
O A:HOH518 4.6 40.3 1.0
O A:ASP80 4.6 6.4 1.0
CA A:ASP80 4.7 6.2 1.0
O A:HOH584 4.7 21.8 1.0
CD A:LYS82 4.9 9.2 1.0
OE1 A:GLN79 4.9 9.9 1.0

Chlorine binding site 3 out of 15 in 6i36

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Chlorine binding site 3 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:15.2
occ:1.00
 O A:HOH512 2.9 34.2 1.0
O A:HOH521 3.2 22.7 1.0
N A:TYR8 3.3 7.0 1.0
O A:HOH575 3.3 39.0 1.0
N A:ASN7 3.4 7.3 1.0
O A:TYR8 3.5 7.6 1.0
CD A:ARG5 3.5 7.7 1.0
NE A:ARG5 3.6 7.7 1.0
CG A:ARG5 3.6 7.5 1.0
O A:HOH482 3.8 16.1 1.0
C A:GLN6 3.9 7.4 1.0
C A:TYR8 4.0 7.4 1.0
CA A:GLN6 4.0 7.5 1.0
N A:GLN6 4.1 7.5 1.0
CA A:TYR8 4.1 7.2 1.0
CA A:ASN7 4.1 7.2 1.0
C A:ASN7 4.1 7.1 1.0
C A:ARG5 4.3 7.5 1.0
O A:HOH610 4.3 27.8 1.0
CB A:TYR8 4.4 7.0 1.0
CB A:ARG5 4.5 7.5 1.0
O A:ARG5 4.5 7.5 1.0
O A:GLN6 4.8 7.3 1.0
CZ A:ARG5 4.8 7.8 1.0
O A:HOH545 4.9 27.9 1.0
CA A:ARG5 5.0 7.5 1.0

Chlorine binding site 4 out of 15 in 6i36

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Chlorine binding site 4 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:22.7
occ:1.00
 O A:HOH579 2.7 24.6 1.0
OG1 A:THR105 3.1 8.7 1.0
O A:HOH393 3.2 12.2 1.0
O A:GLN101 3.6 8.3 1.0
CA A:LEU102 3.6 8.1 1.0
C A:GLN101 3.7 8.4 1.0
N A:LEU102 3.7 8.2 1.0
O A:HOH586 3.8 43.8 1.0
O A:HOH351 3.8 18.4 1.0
CB A:THR105 3.9 8.2 1.0
CB A:LEU102 4.4 8.4 1.0
CB A:GLN101 4.4 9.5 1.0
CG2 A:THR105 4.4 8.5 1.0
O A:HOH555 4.6 39.3 1.0
CD1 A:LEU102 4.6 8.7 1.0
CA A:GLN101 4.7 8.7 1.0
O A:HOH618 4.7 17.2 1.0
O A:HOH348 4.7 29.7 1.0
O A:HOH449 4.7 18.0 1.0
O A:HOH596 4.7 28.9 1.0
C A:LEU102 4.8 8.2 1.0
O A:LEU102 4.9 7.9 1.0
O A:HOH605 5.0 23.7 1.0

Chlorine binding site 5 out of 15 in 6i36

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Chlorine binding site 5 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:11.2
occ:0.25
 FE A:FE2203 2.4 7.6 0.2
NE2 A:HIS169 3.3 8.6 1.0
CE1 A:HIS169 3.4 8.8 1.0
CD2 A:LEU165 3.6 7.0 1.0
ND1 A:HIS169 4.5 9.0 1.0
CD2 A:HIS169 4.5 9.0 1.0
O A:HOH504 4.8 23.3 0.2

Chlorine binding site 6 out of 15 in 6i36

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Chlorine binding site 6 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:13.7
occ:0.70
 OG A:SER170 2.8 12.4 1.0
CL A:CL217 3.0 26.5 1.0
O A:HOH426 3.3 9.3 1.0
CG A:ASN150 3.3 7.0 1.0
ND2 A:ASN150 3.4 7.0 1.0
CB A:ASN150 3.4 7.0 1.0
CB A:SER170 3.6 12.1 1.0
CD1 A:PHE147 3.9 8.3 1.0
OD1 A:ASN150 3.9 7.0 1.0
CE1 A:PHE166 3.9 6.8 1.0
CE1 A:PHE147 4.2 8.5 1.0
CD1 A:PHE166 4.4 6.9 1.0
CA A:SER170 4.7 12.2 1.0
O A:ASP146 4.8 6.8 1.0
CA A:PHE147 4.8 7.3 1.0
CA A:ASN150 5.0 7.0 1.0
CZ A:PHE166 5.0 6.9 1.0

Chlorine binding site 7 out of 15 in 6i36

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Chlorine binding site 7 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:26.5
occ:1.00
 CL A:CL216 3.0 13.7 0.7
O A:HOH469 3.2 19.0 1.0
ND2 A:ASN150 3.5 7.0 1.0
CB A:ASP146 3.6 7.5 1.0
C A:ASP146 4.1 7.0 1.0
CD1 A:PHE147 4.1 8.3 1.0
O A:ASP146 4.1 6.8 1.0
O A:HOH306 4.1 22.7 1.0
O A:HOH426 4.2 9.3 1.0
CE1 A:PHE147 4.3 8.5 1.0
N A:PHE147 4.4 7.1 1.0
CG A:ASN150 4.4 7.0 1.0
CA A:ASP146 4.5 7.0 1.0
CG A:ASP146 4.5 7.7 1.0
OD2 A:ASP146 4.5 8.1 1.0
CA A:PHE147 4.9 7.3 1.0

Chlorine binding site 8 out of 15 in 6i36

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Chlorine binding site 8 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:21.9
occ:1.00
 O A:HOH386 2.9 11.2 1.0
O A:HOH577 3.1 32.8 1.0
O A:HOH364 3.1 32.7 1.0
CA A:LEU113 3.7 8.3 1.0
CB A:ALA15 3.7 6.7 1.0
N A:LEU113 3.8 8.2 1.0
O A:ASP112 3.8 8.3 1.0
C A:ASP112 3.8 8.4 1.0
CD2 A:LEU116 4.0 8.6 1.0
CB A:ASP112 4.2 8.8 1.0
O A:HOH441 4.2 10.3 1.0
CB A:LEU116 4.3 8.4 1.0
CB A:LEU113 4.3 8.7 1.0
O A:HOH355 4.4 18.1 1.0
CD1 A:LEU113 4.4 9.5 1.0
O A:HOH536 4.5 22.6 1.0
CA A:ASP112 4.6 8.3 1.0
NH2 A:ARG18 4.8 15.2 1.0
CG A:LEU116 4.8 8.6 1.0
O A:HOH476 4.9 33.6 1.0
O A:ALA109 4.9 7.5 1.0
C A:LEU113 5.0 8.2 1.0
CA A:ALA15 5.0 6.6 1.0

Chlorine binding site 9 out of 15 in 6i36

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Chlorine binding site 9 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl219

b:36.6
occ:1.00
 O A:HOH537 3.2 43.7 1.0
O A:HOH520 3.3 23.4 1.0
O A:HOH362 3.5 21.3 1.0
O A:HOH443 3.6 13.4 1.0
CE1 A:PHE128 3.7 8.1 1.0
CD A:LYS64 3.8 12.2 1.0
CE A:LYS64 3.8 13.2 1.0
CG A:GLU132 3.9 13.1 1.0
CG A:LYS64 4.0 10.8 1.0
CD A:GLU132 4.0 14.2 1.0
OE1 A:GLU132 4.2 14.9 1.0
CD1 A:PHE128 4.2 7.9 1.0
OE2 A:GLU132 4.4 15.6 1.0
NZ A:LYS64 4.5 14.6 1.0
CZ A:PHE128 4.7 8.0 1.0
NZ A:LYS71 5.0 10.3 1.0
CB A:GLU132 5.0 12.2 1.0

Chlorine binding site 10 out of 15 in 6i36

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Chlorine binding site 10 out of 15 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl220

b:26.3
occ:1.00
 O A:HOH474 3.0 18.8 1.0
O A:HOH618 3.1 17.2 1.0
O A:HOH605 3.2 23.7 1.0
O A:HOH614 3.4 37.4 1.0
CD A:ARG86 3.6 13.3 1.0
CB A:GLU85 3.9 11.2 1.0
CZ3 A:TRP89 3.9 7.6 1.0
CG A:ARG86 3.9 12.1 1.0
O A:HOH393 4.4 12.2 1.0
CH2 A:TRP89 4.4 7.7 1.0
CB A:ALA98 4.5 7.2 1.0
CG A:GLU85 4.6 12.0 0.5
CB A:ARG86 4.9 11.4 1.0
CE3 A:TRP89 4.9 7.6 1.0

Reference:

C.Pozzi, F.Di Pisa, D.Lalli, C.Rosa, E.Theil, P.Turano, S.Mangani. Time-Lapse Anomalous X-Ray Diffraction Shows How Fe(2+) Substrate Ions Move Through Ferritin Protein Nanocages to Oxidoreductase Sites. Acta Crystallogr.,Sect.D V. 71 941 2015.
ISSN: ISSN 0907-4449
PubMed: 25849404
DOI: 10.1107/S1399004715002333
Page generated: Sun Jul 28 01:32:09 2024

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