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Chlorine in PDB 6i9p: Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N

Enzymatic activity of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N

All present enzymatic activity of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N:
1.16.3.1;

Protein crystallography data

The structure of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N, PDB code: 6i9p was solved by C.Pozzi, F.Di Pisa, S.Mangani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.10 / 1.25
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.910, 183.910, 183.910, 90.00, 90.00, 90.00
R / Rfree (%) 11.7 / 13.3

Other elements in 6i9p:

The structure of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N (pdb code 6i9p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N, PDB code: 6i9p:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 6i9p

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Chlorine binding site 1 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:12.6
occ:1.00
 O A:HOH540 2.8 37.0 1.0
O A:HOH569 3.1 37.0 1.0
O A:HOH531 3.1 28.0 1.0
N A:TYR8 3.3 6.4 1.0
N A:ASN7 3.4 6.5 1.0
O A:TYR8 3.5 7.8 1.0
CD A:ARG5 3.5 8.4 1.0
NE A:ARG5 3.6 8.0 1.0
CG A:ARG5 3.6 7.3 1.0
O A:HOH499 3.9 20.6 1.0
C A:GLN6 3.9 6.4 1.0
CA A:GLN6 4.0 6.7 1.0
N A:GLN6 4.1 6.4 1.0
C A:TYR8 4.1 6.8 1.0
CA A:ASN7 4.1 6.9 1.0
CA A:TYR8 4.1 6.7 1.0
C A:ASN7 4.2 6.7 1.0
C A:ARG5 4.3 7.3 1.0
CB A:TYR8 4.4 6.8 1.0
CB A:ARG5 4.5 7.5 1.0
O A:HOH620 4.5 26.3 1.0
O A:ARG5 4.5 7.8 1.0
O A:GLN6 4.8 7.0 1.0
CZ A:ARG5 4.9 8.0 1.0
CA A:ARG5 5.0 6.7 1.0

Chlorine binding site 2 out of 11 in 6i9p

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Chlorine binding site 2 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:25.2
occ:1.00
 O A:HOH584 2.7 38.1 1.0
N A:SER10 3.1 7.7 1.0
O A:HOH568 3.1 34.5 1.0
O A:HOH606 3.2 34.6 1.0
CB A:SER10 3.7 9.7 1.0
CA A:HIS9 3.7 7.7 1.0
O A:HOH531 3.8 28.0 1.0
CD2 A:HIS9 3.8 10.3 1.0
CG A:HIS9 3.8 8.8 1.0
C A:HIS9 3.9 7.1 1.0
NE2 A:HIS9 3.9 11.9 1.0
ND1 A:HIS9 3.9 8.8 1.0
CE1 A:HIS9 4.0 10.3 1.0
CA A:SER10 4.0 8.0 1.0
O A:TYR8 4.3 7.8 1.0
CB A:HIS9 4.4 8.1 1.0
O A:HOH569 4.4 37.0 1.0
O A:HOH559 4.8 34.4 1.0
N A:HIS9 4.9 7.1 1.0
O A:HOH583 5.0 46.6 1.0

Chlorine binding site 3 out of 11 in 6i9p

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Chlorine binding site 3 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:14.5
occ:1.00
 O A:HOH662 3.0 32.4 1.0
O A:HOH550 3.0 13.3 1.0
O A:HOH509 3.2 25.4 1.0
O A:HOH478 3.3 23.2 1.0
ND2 A:ASN17 3.3 7.2 1.0
CB A:ASN17 3.8 6.2 1.0
CA A:ALA14 4.0 6.7 1.0
CG A:ASN17 4.0 6.6 1.0
CB A:VAL77 4.1 8.4 1.0
CB A:ALA14 4.1 7.5 1.0
O A:ALA14 4.2 7.2 1.0
O A:HOH660 4.3 39.5 1.0
CG2 A:VAL77 4.3 9.9 1.0
CG1 A:VAL77 4.5 10.0 1.0
C A:ALA14 4.6 6.4 1.0
O A:HOH356 4.7 10.1 1.0
O A:HOH637 4.9 40.2 1.0
O A:HOH524 4.9 31.7 1.0

Chlorine binding site 4 out of 11 in 6i9p

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Chlorine binding site 4 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:18.8
occ:1.00
 O A:HOH315 2.9 32.5 1.0
O A:HOH462 3.1 38.1 1.0
N A:ASP87 3.1 8.4 1.0
N A:GLU88 3.7 8.7 1.0
CA A:ARG86 3.8 8.9 1.0
CB A:ARG86 3.8 8.9 1.0
C A:ARG86 4.0 8.5 1.0
CA A:ASP87 4.0 8.8 1.0
O A:GLU88 4.0 9.6 1.0
CG A:GLU88 4.0 10.8 0.6
CB A:ASP87 4.1 10.2 1.0
CG A:ARG86 4.2 11.3 1.0
C A:ASP87 4.3 8.8 1.0
OE2 A:GLU88 4.5 14.5 0.6
CB A:GLU88 4.5 12.8 0.4
CA A:GLU88 4.6 11.9 0.4
O A:HOH512 4.6 47.5 1.0
CA A:GLU88 4.6 9.6 0.6
NE A:ARG86 4.6 14.8 0.9
OD2 A:ASP87 4.7 16.4 1.0
CG A:ASP87 4.7 11.3 1.0
CD A:GLU88 4.8 11.7 0.6
CB A:GLU88 4.8 10.2 0.6
C A:GLU88 4.8 8.0 1.0
OE1 A:GLU88 5.0 15.5 0.4
O A:HOH329 5.0 43.9 1.0

Chlorine binding site 5 out of 11 in 6i9p

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Chlorine binding site 5 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:20.6
occ:1.00
 O A:HOH599 2.6 31.9 1.0
OG1 A:THR105 3.1 9.4 1.0
O A:HOH429 3.1 11.4 1.0
CA A:LEU102 3.6 7.5 1.0
O A:GLN101 3.7 8.3 1.0
N A:LEU102 3.7 7.3 1.0
CG A:GLN101 3.7 13.2 0.5
O A:HOH341 3.8 22.5 1.0
C A:GLN101 3.8 7.3 1.0
CB A:THR105 3.8 8.1 1.0
CB A:GLN101 4.3 11.8 0.5
CB A:LEU102 4.3 8.1 1.0
CD A:GLN101 4.3 14.6 0.5
CG2 A:THR105 4.3 9.2 1.0
CB A:GLN101 4.4 11.9 0.5
CD1 A:LEU102 4.4 10.2 1.0
NE2 A:GLN101 4.6 16.9 0.5
O A:HOH368 4.6 32.0 1.0
CA A:GLN101 4.7 10.9 0.5
O A:HOH513 4.7 18.6 1.0
CA A:GLN101 4.7 11.0 0.5
C A:LEU102 4.7 7.3 1.0
O A:HOH488 4.8 21.7 1.0
O A:HOH502 4.9 38.7 1.0
O A:LEU102 4.9 7.6 1.0
O A:HOH316 5.0 26.6 1.0
OE1 A:GLN101 5.0 17.2 0.5

Chlorine binding site 6 out of 11 in 6i9p

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Chlorine binding site 6 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:32.8
occ:1.00
 O A:HOH508 3.0 24.3 0.3
O A:HOH407 3.5 24.6 1.0
CA A:ASN159 3.6 8.9 1.0
CB A:ASN159 3.7 8.5 1.0
N A:ASN159 3.8 9.3 1.0
C A:GLU158 3.8 11.0 1.0
CB A:GLU158 3.9 12.9 1.0
O A:GLU158 3.9 12.8 1.0
ND2 A:ASN159 4.0 12.7 1.0
CG A:ASN159 4.0 9.6 1.0
O A:HOH515 4.3 12.4 1.0
MG A:MG212 4.5 19.1 0.3
CA A:GLU158 4.5 11.8 1.0
O A:HOH482 4.7 19.8 0.5
OD1 A:ASN159 4.7 9.6 1.0
O A:GLY155 4.9 8.7 1.0
O A:HOH427 5.0 24.3 1.0

Chlorine binding site 7 out of 11 in 6i9p

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Chlorine binding site 7 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl219

b:14.0
occ:0.70
 N A:GLU136 3.2 11.7 1.0
O A:HOH391 3.2 13.8 0.8
C A:GLU132 3.4 10.7 1.0
N A:GLU135 3.4 10.5 1.0
N A:TYR133 3.4 8.4 1.0
O A:SER131 3.5 15.0 1.0
CB A:GLU135 3.7 13.0 1.0
O A:GLU132 3.7 13.6 1.0
C A:TYR133 3.8 8.4 1.0
C A:SER131 3.8 11.4 1.0
CA A:GLU135 3.8 11.6 1.0
CA A:GLU132 3.9 10.9 1.0
N A:GLU132 3.9 10.2 1.0
N A:LEU134 3.9 8.9 1.0
O A:HOH369 3.9 37.0 1.0
C A:GLU135 3.9 11.4 1.0
CB A:GLU136 4.0 12.8 0.1
CA A:TYR133 4.0 9.0 1.0
CB A:GLU136 4.0 18.9 0.9
O A:GLU130 4.1 14.3 1.0
O A:TYR133 4.1 8.8 1.0
CA A:GLU136 4.2 12.4 0.1
CA A:GLU136 4.2 16.6 0.9
C A:LEU134 4.4 8.9 1.0
CG A:GLU135 4.4 10.0 0.8
O A:HOH652 4.6 18.7 0.8
O A:HOH440 4.7 27.6 0.6
CA A:SER131 4.7 13.6 0.5
CA A:SER131 4.8 10.9 0.5
CA A:LEU134 4.8 8.8 1.0
C A:GLU130 4.8 11.2 1.0
O A:HOH458 4.9 14.7 0.8
O A:HOH581 4.9 39.4 1.0

Chlorine binding site 8 out of 11 in 6i9p

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Chlorine binding site 8 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl220

b:8.7
occ:0.25
 NE2 A:HIS169 3.2 10.8 1.0
CD2 A:LEU165 3.9 9.8 1.0
CE1 A:HIS169 3.9 14.6 1.0
CD2 A:HIS169 4.2 9.3 1.0

Chlorine binding site 9 out of 11 in 6i9p

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Chlorine binding site 9 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl221

b:13.9
occ:0.25
 O A:HOH625 3.0 43.8 1.0
CE1 A:HIS169 3.7 14.6 1.0
ND1 A:HIS169 4.5 14.1 1.0
NE2 A:HIS169 4.6 10.8 1.0
O A:HOH511 4.8 37.8 1.0

Chlorine binding site 10 out of 11 in 6i9p

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Chlorine binding site 10 out of 11 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant H54N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl222

b:18.8
occ:1.00
 NZ A:LYS82 2.8 9.3 0.6
NZ A:LYS82 3.1 9.4 0.5
CE A:LYS82 3.4 9.1 0.6
CE A:LYS82 3.4 9.1 0.5
O A:HOH336 4.8 23.6 1.0
CD A:LYS82 4.9 8.6 0.6
CD A:LYS82 4.9 8.7 0.5

Reference:

C.Pozzi, F.Di Pisa, D.Lalli, C.Rosa, P.Turano, S.Mangani. Effect of the Point Mutation H54N on the Ferroxidase Process of Rana Catesbeiana H' Ferritin. J.Inorg.Biochem. V. 197 10697 2019.
ISSN: ISSN 0162-0134
PubMed: 31075719
DOI: 10.1016/J.JINORGBIO.2019.110697
Page generated: Sun Jul 28 01:37:43 2024

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