Atomistry » Chlorine » PDB 6ic7-6ivr » 6ivl
Atomistry »
  Chlorine »
    PDB 6ic7-6ivr »
      6ivl »

Chlorine in PDB 6ivl: Crystal Structure of A Membrane Protein L259A

Protein crystallography data

The structure of Crystal Structure of A Membrane Protein L259A, PDB code: 6ivl was solved by A.Kittredge, F.Fukuda, Y.Zhang, T.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.80 / 3.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 114.350, 160.539, 161.878, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 24.4

Other elements in 6ivl:

The structure of Crystal Structure of A Membrane Protein L259A also contains other interesting chemical elements:

Zinc (Zn) 16 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Membrane Protein L259A (pdb code 6ivl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of A Membrane Protein L259A, PDB code: 6ivl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6ivl

Go back to Chlorine Binding Sites List in 6ivl
Chlorine binding site 1 out of 6 in the Crystal Structure of A Membrane Protein L259A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Membrane Protein L259A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:0.7
occ:1.00
ZN A:ZN302 2.6 0.9 1.0
CB A:HIS108 3.2 96.7 1.0
ND1 A:HIS108 3.4 0.0 1.0
CG A:HIS108 3.7 0.5 1.0
O A:HIS108 3.7 99.4 1.0
CB A:HIS111 3.7 92.8 1.0
CG A:ARG112 3.7 0.5 1.0
CA A:HIS108 3.8 90.4 1.0
ND1 A:HIS111 4.0 91.2 1.0
NH1 A:ARG112 4.1 0.9 1.0
C A:HIS108 4.2 99.2 1.0
O A:HOH402 4.2 91.7 1.0
CD A:ARG112 4.3 0.1 1.0
O A:THR287 4.3 0.1 1.0
CG A:HIS111 4.4 93.6 1.0
CB A:THR287 4.5 93.4 1.0
N A:ARG112 4.6 82.7 1.0
CZ A:ARG112 4.6 0.6 1.0
CE1 A:HIS108 4.6 0.9 1.0
CG2 A:THR287 4.6 76.3 1.0
NE A:ARG112 4.7 0.9 1.0
CB A:ARG112 4.9 0.6 1.0
CD2 A:HIS108 5.0 0.5 1.0
CA A:HIS111 5.0 88.7 1.0

Chlorine binding site 2 out of 6 in 6ivl

Go back to Chlorine Binding Sites List in 6ivl
Chlorine binding site 2 out of 6 in the Crystal Structure of A Membrane Protein L259A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Membrane Protein L259A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl305

b:83.8
occ:1.00
ZN C:ZN301 2.1 90.3 1.0
OE1 C:GLU191 3.3 78.9 1.0
OG1 C:THR95 3.3 83.1 1.0
NZ C:LYS188 3.3 85.0 1.0
NE2 D:HIS194 3.4 69.7 1.0
CE C:LYS188 3.4 78.1 1.0
CD C:LYS188 3.4 75.0 1.0
O C:HOH403 3.5 73.2 1.0
OD1 D:ASP190 3.6 97.2 1.0
CG D:ASP190 3.9 89.9 1.0
CD2 D:HIS194 3.9 72.2 1.0
CG2 C:THR95 3.9 68.0 1.0
CB D:ASP190 4.0 76.0 1.0
CB C:THR95 4.1 73.5 1.0
CD C:GLU191 4.2 82.0 1.0
OE2 C:GLU191 4.2 86.6 1.0
CG2 C:ILE91 4.3 71.0 1.0
CE1 D:HIS194 4.3 73.3 1.0
CA D:ASP190 4.4 72.1 1.0
O C:ILE91 4.5 69.9 1.0
CA C:ALA92 4.5 60.5 1.0
OD2 D:ASP190 4.7 95.0 1.0
O D:ASP190 4.8 67.8 1.0
CG C:LYS188 4.8 73.9 1.0
C C:ILE91 4.9 73.5 1.0
C D:ASP190 4.9 74.1 1.0
N C:ALA92 5.0 72.3 1.0

Chlorine binding site 3 out of 6 in 6ivl

Go back to Chlorine Binding Sites List in 6ivl
Chlorine binding site 3 out of 6 in the Crystal Structure of A Membrane Protein L259A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Membrane Protein L259A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl304

b:0.9
occ:1.00
ZN D:ZN301 2.3 0.5 1.0
CE1 D:HIS108 3.3 0.0 1.0
CD D:ARG101 3.4 0.8 1.0
CG D:ARG101 3.6 0.4 1.0
NE D:ARG101 3.6 1.0 1.0
ND1 D:HIS108 3.8 0.5 1.0
ND1 D:HIS111 3.8 0.2 1.0
CL D:CL305 4.1 0.2 1.0
CZ D:ARG101 4.1 0.9 1.0
CA D:THR287 4.2 0.0 1.0
CE1 D:HIS111 4.2 0.6 1.0
O D:THR287 4.2 0.9 1.0
NH2 D:ARG101 4.3 0.0 1.0
NE2 D:HIS108 4.3 0.1 1.0
C D:THR287 4.4 0.3 1.0
O D:MET286 4.5 0.6 1.0
CG2 D:THR287 4.7 0.8 1.0
CB D:THR287 4.8 0.2 1.0
NH1 D:ARG101 4.9 0.5 1.0
CG D:HIS108 4.9 0.5 1.0

Chlorine binding site 4 out of 6 in 6ivl

Go back to Chlorine Binding Sites List in 6ivl
Chlorine binding site 4 out of 6 in the Crystal Structure of A Membrane Protein L259A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Membrane Protein L259A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl305

b:0.2
occ:1.00
ZN D:ZN301 2.1 0.5 1.0
ND1 D:HIS108 2.9 0.5 1.0
CB D:HIS108 3.3 0.9 1.0
CG D:HIS108 3.3 0.5 1.0
CB D:HIS111 3.3 0.3 1.0
ND1 D:HIS111 3.4 0.2 1.0
CA D:HIS108 3.6 0.4 1.0
O D:HIS108 3.7 0.1 1.0
CG D:HIS111 3.7 0.7 1.0
CE1 D:HIS108 3.9 0.0 1.0
CL D:CL304 4.1 0.9 1.0
C D:HIS108 4.1 0.4 1.0
CD2 D:HIS108 4.3 0.0 1.0
O D:THR287 4.4 0.9 1.0
CG D:ARG112 4.4 0.1 1.0
CE1 D:HIS111 4.5 0.6 1.0
NE2 D:HIS108 4.6 0.1 1.0
N D:ARG112 4.6 0.3 1.0
CA D:HIS111 4.6 0.9 1.0
CG2 D:THR287 4.7 0.8 1.0
NH1 D:ARG112 4.7 0.2 1.0
CB D:THR287 4.8 0.2 1.0
C D:HIS111 4.9 0.2 1.0
N D:HIS108 4.9 0.5 1.0
CD2 D:HIS111 5.0 96.9 1.0

Chlorine binding site 5 out of 6 in 6ivl

Go back to Chlorine Binding Sites List in 6ivl
Chlorine binding site 5 out of 6 in the Crystal Structure of A Membrane Protein L259A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Membrane Protein L259A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl304

b:81.4
occ:1.00
ZN E:ZN302 2.1 88.5 1.0
ND1 E:HIS108 3.1 91.0 1.0
CE1 E:HIS108 3.2 90.7 1.0
ND1 E:HIS111 3.4 86.0 1.0
NE E:ARG101 3.7 85.5 1.0
CD E:ARG101 3.7 84.7 1.0
CZ E:ARG101 3.8 86.7 1.0
CE1 E:HIS111 3.9 84.4 1.0
NH2 E:ARG101 3.9 85.8 1.0
CG E:ARG101 4.1 83.2 1.0
CL E:CL305 4.1 91.1 1.0
O E:THR287 4.2 93.0 1.0
CA E:THR287 4.3 86.8 1.0
CG E:HIS108 4.4 82.4 1.0
NE2 E:HIS108 4.4 92.7 1.0
NH1 E:ARG101 4.4 97.5 1.0
CG E:HIS111 4.5 77.1 1.0
C E:THR287 4.5 92.2 1.0
CB E:THR287 4.7 90.8 1.0
CG2 E:THR287 4.7 78.9 1.0
O E:MET286 4.7 89.9 1.0
O E:PRO105 4.8 79.2 1.0
CB E:HIS111 4.9 78.1 1.0
NE2 E:HIS111 5.0 85.1 1.0

Chlorine binding site 6 out of 6 in 6ivl

Go back to Chlorine Binding Sites List in 6ivl
Chlorine binding site 6 out of 6 in the Crystal Structure of A Membrane Protein L259A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Membrane Protein L259A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl305

b:91.1
occ:1.00
ZN E:ZN302 2.4 88.5 1.0
O E:HIS108 3.4 89.5 1.0
CB E:HIS108 3.4 79.4 1.0
CB E:HIS111 3.7 78.1 1.0
CA E:HIS108 3.8 82.6 1.0
NE E:ARG112 3.8 0.9 1.0
O E:THR287 3.8 93.0 1.0
ND1 E:HIS108 3.8 91.0 1.0
CG E:ARG112 3.9 0.2 1.0
CG E:HIS108 3.9 82.4 1.0
C E:HIS108 4.0 87.0 1.0
CB E:THR287 4.1 90.8 1.0
CL E:CL304 4.1 81.4 1.0
ND1 E:HIS111 4.2 86.0 1.0
N E:ARG112 4.2 78.5 1.0
CD E:ARG112 4.2 0.7 1.0
CG E:HIS111 4.4 77.1 1.0
CZ E:ARG112 4.5 0.4 1.0
CG2 E:THR287 4.5 78.9 1.0
CB E:ARG112 4.6 98.2 1.0
CA E:ARG112 4.7 83.7 1.0
C E:THR287 4.7 92.2 1.0
NH2 E:ARG112 4.8 0.2 1.0
C E:HIS111 4.8 86.1 1.0
CA E:THR287 4.8 86.8 1.0
CA E:HIS111 4.9 81.3 1.0
NE2 E:GLN289 4.9 98.7 1.0
CE1 E:HIS108 4.9 90.7 1.0

Reference:

C.Ji, A.Kittredge, A.Hopiavuori, N.Ward, S.Chen, Y.Fukuda, Y.Zhang, T.Yang. Dual CA2+-Dependent Gates in Human BESTROPHIN1 Underlie Disease-Causing Mechanisms of Gain-of-Function Mutations. Commun Biol V. 2 240 2019.
ISSN: ESSN 2399-3642
PubMed: 31263784
DOI: 10.1038/S42003-019-0433-3
Page generated: Sat Dec 12 13:10:38 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy