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Chlorine in PDB 6j2m: Crystal Structure of ATFKBP53 C-Terminal Domain

Enzymatic activity of Crystal Structure of ATFKBP53 C-Terminal Domain

All present enzymatic activity of Crystal Structure of ATFKBP53 C-Terminal Domain:
5.2.1.8;

Protein crystallography data

The structure of Crystal Structure of ATFKBP53 C-Terminal Domain, PDB code: 6j2m was solved by A.K.Singh, D.Vasudevan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.25 / 1.13
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.040, 48.190, 59.500, 90.00, 90.00, 90.00
R / Rfree (%) 12.5 / 14.5

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of ATFKBP53 C-Terminal Domain (pdb code 6j2m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the Crystal Structure of ATFKBP53 C-Terminal Domain, PDB code: 6j2m:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 6j2m

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Chlorine binding site 1 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:20.6
occ:1.00
 NZ A:LYS380 3.0 46.2 1.0
CE A:LYS380 3.1 42.1 1.0
N A:LYS384 3.3 12.3 1.0
CB A:VAL438 3.7 10.7 1.0
CA A:GLY383 3.7 17.1 1.0
CG A:LYS384 3.8 17.2 1.0
CG2 A:VAL438 3.8 10.9 1.0
C A:GLY383 4.0 13.8 1.0
CG1 A:VAL438 4.0 12.6 1.0
CE A:LYS384 4.0 30.8 1.0
CB A:LYS384 4.1 12.5 1.0
CA A:LYS384 4.3 12.0 1.0
CD A:LYS384 4.4 21.9 1.0
CD A:LYS380 4.6 39.8 1.0
N A:GLY383 5.0 18.0 1.0

Chlorine binding site 2 out of 14 in 6j2m

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Chlorine binding site 2 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:10.8
occ:0.85
 O A:HOH631 3.1 8.3 1.0
O A:HOH602 3.3 23.0 1.0
N A:TRP466 3.4 6.4 1.0
CD1 A:TRP466 3.6 7.5 1.0
O A:ASN464 3.7 10.7 1.0
CB A:TRP466 3.9 6.8 1.0
CB A:LYS402 3.9 11.9 1.0
CD A:LYS402 4.0 16.9 1.0
CA A:SER465 4.1 7.5 1.0
CG A:TRP466 4.1 6.7 1.0
C A:SER465 4.2 6.4 1.0
O A:HOH660 4.2 19.7 1.0
CA A:TRP466 4.2 6.2 1.0
O A:HOH659 4.3 20.2 1.0
O A:HOH604 4.3 18.7 1.0
CG A:LYS402 4.4 13.1 1.0
OE1 A:GLN401 4.7 16.1 1.0
O A:TRP466 4.7 6.8 1.0
C A:ASN464 4.7 6.8 1.0
NE1 A:TRP466 4.7 8.0 1.0
N A:LYS402 4.8 9.1 1.0
CA A:LYS402 4.8 11.0 1.0
N A:SER465 4.9 6.6 1.0
CB A:SER465 4.9 8.8 1.0
C A:TRP466 5.0 6.1 1.0

Chlorine binding site 3 out of 14 in 6j2m

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Chlorine binding site 3 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:12.5
occ:0.85
 O A:HOH684 2.8 23.7 1.0
O A:HOH687 3.0 10.1 1.0
O A:HOH622 3.1 8.9 1.0
CA A:GLY453 3.6 7.8 1.0
CA A:SER449 3.6 7.9 1.0
O A:HOH665 3.7 15.5 1.0
N A:SER449 3.7 7.1 1.0
CB A:SER449 3.9 10.1 1.0
C A:PRO448 4.0 7.1 1.0
O A:PRO448 4.2 7.6 1.0
CB A:PRO448 4.3 9.1 1.0
C A:GLY453 4.3 7.3 1.0
N A:VAL454 4.4 6.8 1.0
N A:GLY453 4.7 7.1 1.0
CA A:PRO448 4.8 7.7 1.0
CL A:CL505 4.9 22.6 0.8
C A:SER449 5.0 7.8 1.0

Chlorine binding site 4 out of 14 in 6j2m

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Chlorine binding site 4 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:22.6
occ:0.75
 O A:HOH687 2.9 10.1 1.0
N A:SER449 3.1 7.1 1.0
OG A:SER449 3.1 11.7 1.0
CB A:SER449 3.4 10.1 1.0
CB A:PRO447 3.4 9.4 1.0
CD A:PRO448 3.6 7.9 1.0
N A:PRO448 3.6 7.0 1.0
CA A:SER449 3.8 7.9 1.0
C A:PRO447 4.0 6.6 1.0
C A:PRO448 4.1 7.1 1.0
CA A:PRO448 4.2 7.7 1.0
CB A:PRO448 4.2 9.1 1.0
CA A:PRO447 4.2 7.0 1.0
CG A:PRO448 4.3 9.7 1.0
CG A:PRO447 4.5 14.6 1.0
O A:PRO447 4.7 6.8 1.0
CL A:CL504 4.9 12.5 0.8
C A:SER449 4.9 7.8 1.0

Chlorine binding site 5 out of 14 in 6j2m

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Chlorine binding site 5 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:13.7
occ:0.53
 OD2 A:ASP470 2.8 11.5 1.0
NZ A:LYS399 3.5 15.1 1.0
CD1 A:ILE397 3.5 8.4 1.0
CG A:ASP470 4.0 8.6 1.0
CE A:LYS399 4.2 13.4 1.0
O A:HOH619 4.5 14.8 1.0
CB A:ASP470 4.8 6.8 1.0
CG1 A:ILE397 4.8 6.6 1.0
OD1 A:ASP470 4.8 10.1 1.0
CB A:ILE397 4.9 6.1 1.0
CG2 A:ILE397 5.0 7.3 1.0

Chlorine binding site 6 out of 14 in 6j2m

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Chlorine binding site 6 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl507

b:20.6
occ:0.30
 O A:HOH678 3.0 15.3 1.0
O A:LEU420 3.0 8.0 1.0
C A:GLY421 3.4 10.3 1.0
N A:GLY389 3.4 8.3 1.0
O A:GLY421 3.4 15.3 1.0
CA A:GLY421 3.6 8.8 1.0
CG2 A:ILE422 3.7 12.9 1.0
N A:ILE422 3.9 9.3 1.0
CA A:GLY389 3.9 9.4 1.0
CB A:PRO388 4.0 11.2 1.0
C A:PRO388 4.0 8.4 1.0
C A:LEU420 4.0 6.6 1.0
CA A:PRO388 4.2 9.0 1.0
N A:GLY421 4.3 7.2 1.0
CA A:ILE422 4.4 11.0 1.0
CB A:ILE422 4.7 10.4 1.0
O A:PRO388 4.8 10.0 1.0

Chlorine binding site 7 out of 14 in 6j2m

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Chlorine binding site 7 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl508

b:17.8
occ:0.60
 N A:GLU375 3.1 8.9 1.0
CA A:GLU374 3.7 8.4 1.0
C A:GLU374 3.9 8.6 1.0
CG A:GLU374 3.9 16.8 1.0
CB A:GLU375 3.9 10.9 1.0
CA A:GLU375 4.0 9.6 1.0
O A:GLU375 4.2 13.3 1.0
CB A:GLU374 4.2 9.7 1.0
CG A:GLU375 4.3 11.6 1.0
O A:VAL373 4.4 8.9 1.0
OE1 A:GLU375 4.5 19.4 1.0
C A:GLU375 4.6 10.0 1.0
CD A:GLU375 4.7 14.0 1.0
N A:GLU374 4.8 7.7 1.0

Chlorine binding site 8 out of 14 in 6j2m

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Chlorine binding site 8 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl509

b:16.8
occ:0.75
 N A:GLY412 3.2 12.0 1.0
NH2 A:ARG395 3.2 20.0 1.0
NE A:ARG395 3.7 20.0 1.0
CZ A:ARG395 3.8 20.0 1.0
CA A:GLY412 3.9 14.5 1.0
CG2 A:ILE411 4.0 9.9 1.0
C A:ILE411 4.1 9.4 1.0
CA A:ILE411 4.1 8.2 1.0
O A:HOH613 4.2 32.0 1.0
CB A:ILE411 4.6 8.4 1.0
NH1 A:ARG395 4.9 20.0 1.0
C A:GLY412 5.0 16.2 1.0

Chlorine binding site 9 out of 14 in 6j2m

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Chlorine binding site 9 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl510

b:28.6
occ:0.85
 ND2 A:ASN403 3.2 16.8 1.0
O A:HOH608 3.4 24.9 1.0
NZ A:LYS405 3.5 29.4 1.0
CD1 A:LEU400 3.8 11.0 1.0
CE A:LYS402 4.1 19.0 1.0
CD A:LYS405 4.1 21.7 1.0
CE A:LYS405 4.2 23.6 1.0
CG A:ASN403 4.4 11.7 1.0
CG A:PRO462 4.5 14.6 1.0
NZ A:LYS402 4.6 22.4 1.0
OD1 A:ASN403 4.8 10.6 1.0

Chlorine binding site 10 out of 14 in 6j2m

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Chlorine binding site 10 out of 14 in the Crystal Structure of ATFKBP53 C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of ATFKBP53 C-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl511

b:41.1
occ:0.60
 O A:HOH664 3.0 32.3 1.0
O A:HOH663 3.3 24.9 1.0
C42 A:FK5501 3.8 7.5 1.0
C29 A:FK5501 4.2 7.8 1.0
C33 A:FK5501 4.4 10.7 1.0
C34 A:FK5501 4.4 9.4 1.0
C43 A:FK5501 4.5 17.7 1.0
CE1 A:TYR452 4.6 7.8 1.0
CB A:ALA457 4.8 30.0 1.0
C27 A:FK5501 4.9 6.5 1.0
CD1 A:TYR452 4.9 7.9 1.0
C28 A:FK5501 5.0 6.8 1.0

Reference:

A.K.Singh, A.Datta, J.Chacko, S.Luan, D.Vasudevan. ATFKBP53 - A Chimeric Histone Chaperone with Functional Nucleoplasmin and Ppiase Domains Nucleic Acids Res. 2019.
ISSN: ESSN 1362-4962
Page generated: Sun Jul 28 02:01:55 2024

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