Chlorine in PDB 6jiz: Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution
Protein crystallography data
The structure of Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution, PDB code: 6jiz
was solved by
H.Li,
L.Wu,
G.W.Zheng,
J.H.Zhou,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.00 /
1.76
|
Space group
|
P 31 1 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
106.659,
106.659,
168.557,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
16.4 /
19.2
|
Other elements in 6jiz:
The structure of Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution
(pdb code 6jiz). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution, PDB code: 6jiz:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 6jiz
Go back to
Chlorine Binding Sites List in 6jiz
Chlorine binding site 1 out
of 5 in the Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:52.7
occ:0.88
|
NE1
|
A:TRP287
|
3.1
|
23.5
|
1.0
|
O
|
A:HOH516
|
3.5
|
35.9
|
1.0
|
CD2
|
A:LEU225
|
3.7
|
36.9
|
1.0
|
CB
|
A:ALA241
|
3.7
|
27.7
|
1.0
|
CD1
|
A:TRP287
|
3.8
|
20.0
|
1.0
|
CB
|
A:LEU225
|
3.9
|
35.1
|
1.0
|
CD1
|
A:LEU225
|
4.1
|
39.8
|
1.0
|
CG
|
A:LEU225
|
4.1
|
41.3
|
1.0
|
CE2
|
A:TRP287
|
4.2
|
20.4
|
1.0
|
SD
|
A:MET216
|
4.6
|
45.7
|
1.0
|
CZ2
|
A:TRP287
|
4.7
|
22.0
|
1.0
|
CE
|
A:MET216
|
4.8
|
30.6
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 6jiz
Go back to
Chlorine Binding Sites List in 6jiz
Chlorine binding site 2 out
of 5 in the Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl304
b:27.7
occ:1.00
|
O
|
B:HOH633
|
3.1
|
33.2
|
1.0
|
O
|
C:HOH560
|
3.2
|
24.4
|
1.0
|
NH1
|
B:ARG103
|
3.2
|
18.7
|
1.0
|
NH2
|
B:ARG103
|
3.3
|
15.9
|
1.0
|
O
|
C:HOH455
|
3.5
|
28.9
|
1.0
|
CZ
|
B:ARG103
|
3.7
|
22.9
|
1.0
|
CD2
|
B:LEU169
|
3.8
|
15.7
|
1.0
|
CD1
|
B:LEU169
|
4.0
|
14.8
|
1.0
|
CB
|
B:PRO99
|
4.1
|
14.1
|
1.0
|
O
|
B:HOH569
|
4.2
|
33.4
|
1.0
|
CB
|
C:ALA195
|
4.3
|
16.7
|
1.0
|
CG
|
B:LEU169
|
4.3
|
16.5
|
1.0
|
CG
|
B:PRO99
|
4.6
|
14.5
|
1.0
|
CB
|
C:SER260
|
4.6
|
25.2
|
1.0
|
CB
|
B:LEU169
|
4.7
|
10.8
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 6jiz
Go back to
Chlorine Binding Sites List in 6jiz
Chlorine binding site 3 out
of 5 in the Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl305
b:62.5
occ:1.00
|
O
|
B:HOH483
|
3.2
|
40.8
|
1.0
|
NH1
|
B:ARG229
|
3.3
|
22.7
|
1.0
|
CD
|
B:ARG229
|
3.3
|
18.3
|
1.0
|
O
|
B:HOH526
|
3.7
|
31.0
|
1.0
|
O
|
A:HOH699
|
3.9
|
47.7
|
1.0
|
CZ
|
B:ARG229
|
4.2
|
20.9
|
1.0
|
NE
|
B:ARG229
|
4.2
|
18.7
|
1.0
|
CG
|
B:ARG229
|
4.5
|
16.7
|
1.0
|
O
|
A:LYS111
|
4.5
|
17.4
|
1.0
|
CA
|
A:GLY113
|
4.7
|
13.2
|
1.0
|
O
|
A:HOH679
|
4.8
|
26.2
|
1.0
|
N
|
A:GLY113
|
4.8
|
12.1
|
1.0
|
OE1
|
B:GLU226
|
4.9
|
29.0
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 6jiz
Go back to
Chlorine Binding Sites List in 6jiz
Chlorine binding site 4 out
of 5 in the Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl304
b:47.6
occ:1.00
|
O
|
C:HOH652
|
2.7
|
41.2
|
1.0
|
N
|
C:LYS297
|
2.8
|
28.3
|
1.0
|
O
|
B:GLY261
|
2.8
|
20.9
|
1.0
|
CB
|
C:LYS297
|
3.5
|
35.1
|
1.0
|
CA
|
C:LYS296
|
3.5
|
18.4
|
1.0
|
C
|
C:LYS296
|
3.6
|
19.8
|
1.0
|
C
|
B:GLY261
|
3.7
|
25.5
|
1.0
|
CA
|
C:LYS297
|
3.7
|
34.6
|
1.0
|
CA
|
B:GLY261
|
3.8
|
20.3
|
1.0
|
CG
|
C:LYS297
|
3.8
|
54.9
|
1.0
|
O
|
C:HOH590
|
3.9
|
28.6
|
1.0
|
CG
|
C:LYS296
|
4.0
|
27.6
|
1.0
|
CB
|
C:LYS296
|
4.3
|
21.2
|
1.0
|
O
|
C:LYS295
|
4.3
|
20.5
|
1.0
|
O
|
C:HOH404
|
4.4
|
48.9
|
1.0
|
O
|
B:HOH602
|
4.5
|
36.5
|
1.0
|
N
|
C:LYS296
|
4.7
|
17.8
|
1.0
|
O
|
C:LYS297
|
4.7
|
41.1
|
1.0
|
C
|
C:LYS297
|
4.8
|
41.3
|
1.0
|
O
|
C:LYS296
|
4.8
|
22.1
|
1.0
|
C
|
C:LYS295
|
4.9
|
19.6
|
1.0
|
O
|
B:SER260
|
4.9
|
23.0
|
1.0
|
N
|
B:VAL262
|
5.0
|
17.9
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 6jiz
Go back to
Chlorine Binding Sites List in 6jiz
Chlorine binding site 5 out
of 5 in the Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl305
b:64.8
occ:1.00
|
NE2
|
C:HIS112
|
2.8
|
33.5
|
1.0
|
O
|
C:HOH655
|
3.1
|
46.8
|
1.0
|
NZ
|
C:LYS111
|
3.2
|
56.9
|
1.0
|
CD1
|
C:TRP108
|
3.4
|
24.3
|
1.0
|
CE1
|
C:HIS112
|
3.5
|
36.2
|
1.0
|
NE1
|
C:TRP108
|
3.6
|
27.1
|
1.0
|
CE
|
C:LYS111
|
3.7
|
50.2
|
1.0
|
OE2
|
C:GLU83
|
3.7
|
44.7
|
1.0
|
CD
|
C:LYS111
|
3.8
|
38.6
|
1.0
|
CD2
|
C:HIS112
|
3.9
|
26.1
|
1.0
|
O
|
C:HOH562
|
4.1
|
52.6
|
1.0
|
OE1
|
C:GLU83
|
4.1
|
40.4
|
1.0
|
CD
|
C:GLU83
|
4.1
|
45.6
|
1.0
|
CG
|
C:TRP108
|
4.7
|
23.0
|
1.0
|
ND1
|
C:HIS112
|
4.7
|
30.2
|
1.0
|
CG
|
C:LYS111
|
4.8
|
33.7
|
1.0
|
O
|
C:HOH639
|
4.9
|
41.3
|
1.0
|
CE2
|
C:TRP108
|
4.9
|
26.6
|
1.0
|
CG
|
C:HIS112
|
4.9
|
23.9
|
1.0
|
|
Reference:
H.Li,
L.Wu,
G.W.Zheng,
J.H.Zhou.
Apo Structure of An Imine Reductase at 1.76 Angstrom Resolution To Be Published.
Page generated: Sun Jul 28 02:08:18 2024
|