Chlorine in PDB 6jj1: Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues
Enzymatic activity of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues
All present enzymatic activity of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues:
3.1.1.29;
Protein crystallography data
The structure of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues, PDB code: 6jj1
was solved by
N.Iqbal,
P.Sharma,
A.Chaudhary,
S.Sharma,
T.P.Singh,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.08 /
0.97
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
33.986,
66.131,
76.103,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
13.4 /
16.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues
(pdb code 6jj1). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues, PDB code: 6jj1:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 6jj1
Go back to
Chlorine Binding Sites List in 6jj1
Chlorine binding site 1 out
of 3 in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:13.2
occ:0.60
|
HH11
|
A:ARG131
|
2.2
|
7.7
|
1.0
|
HE2
|
A:HIS94
|
2.2
|
7.9
|
1.0
|
HG2
|
A:ARG131
|
2.7
|
6.5
|
1.0
|
HD3
|
A:ARG131
|
2.8
|
7.3
|
1.0
|
O
|
A:HOH356
|
2.9
|
22.7
|
1.0
|
NE2
|
A:HIS94
|
2.9
|
6.9
|
1.0
|
NH1
|
A:ARG131
|
3.0
|
7.9
|
1.0
|
HB2
|
A:ARG131
|
3.2
|
7.0
|
1.0
|
HG2
|
A:ARG133
|
3.2
|
9.5
|
1.0
|
HB3
|
A:ARG131
|
3.2
|
7.0
|
1.0
|
CG
|
A:ARG131
|
3.2
|
6.4
|
1.0
|
HD2
|
A:ARG133
|
3.3
|
12.5
|
1.0
|
HD3
|
A:LYS107
|
3.3
|
17.5
|
1.0
|
HD12
|
A:LEU118
|
3.3
|
9.7
|
1.0
|
HH12
|
A:ARG131
|
3.4
|
7.7
|
1.0
|
CB
|
A:ARG131
|
3.4
|
6.3
|
1.0
|
HD13
|
A:LEU118
|
3.4
|
9.7
|
1.0
|
HE1
|
A:HIS94
|
3.4
|
7.8
|
1.0
|
CD
|
A:ARG131
|
3.4
|
7.1
|
1.0
|
CE1
|
A:HIS94
|
3.5
|
6.9
|
1.0
|
HE
|
A:ARG133
|
3.8
|
15.9
|
1.0
|
CD1
|
A:LEU118
|
3.8
|
9.6
|
1.0
|
CD
|
A:ARG133
|
3.8
|
10.2
|
1.0
|
CG
|
A:ARG133
|
3.8
|
7.8
|
1.0
|
NE
|
A:ARG133
|
3.9
|
12.4
|
1.0
|
CZ
|
A:ARG131
|
4.0
|
7.2
|
1.0
|
HG3
|
A:ARG133
|
4.0
|
9.5
|
1.0
|
CD2
|
A:HIS94
|
4.1
|
6.7
|
1.0
|
HD11
|
A:LEU118
|
4.1
|
9.7
|
1.0
|
HB3
|
A:LYS107
|
4.1
|
12.8
|
1.0
|
HG3
|
A:ARG131
|
4.2
|
6.5
|
1.0
|
NE
|
A:ARG131
|
4.2
|
6.9
|
1.0
|
HD2
|
A:ARG131
|
4.2
|
7.3
|
1.0
|
CD
|
A:LYS107
|
4.3
|
23.8
|
1.0
|
HD2
|
A:HIS94
|
4.4
|
7.8
|
1.0
|
O
|
A:GLY111
|
4.4
|
11.3
|
1.0
|
CZ
|
A:ARG133
|
4.5
|
16.8
|
1.0
|
HZ3
|
A:LYS107
|
4.5
|
25.3
|
1.0
|
HD2
|
A:LYS107
|
4.6
|
17.4
|
1.0
|
OE1
|
A:GLU96
|
4.6
|
9.8
|
1.0
|
HG2
|
A:LYS107
|
4.6
|
16.1
|
1.0
|
HD3
|
A:ARG133
|
4.7
|
12.6
|
1.0
|
ND1
|
A:HIS94
|
4.8
|
6.9
|
1.0
|
CG
|
A:LYS107
|
4.8
|
13.4
|
1.0
|
CB
|
A:LYS107
|
4.9
|
10.6
|
1.0
|
HH21
|
A:ARG133
|
4.9
|
16.5
|
1.0
|
HD22
|
A:LEU118
|
4.9
|
8.1
|
1.0
|
CA
|
A:ARG131
|
4.9
|
5.8
|
1.0
|
NH2
|
A:ARG133
|
5.0
|
26.7
|
1.0
|
O
|
A:GLY109
|
5.0
|
12.7
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 6jj1
Go back to
Chlorine Binding Sites List in 6jj1
Chlorine binding site 2 out
of 3 in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:11.0
occ:0.80
|
HD21
|
A:ASN12
|
2.5
|
9.8
|
1.0
|
HD2
|
A:HIS22
|
2.8
|
8.8
|
1.0
|
HB3
|
A:MET69
|
2.9
|
8.7
|
1.0
|
O
|
A:HOH414
|
3.2
|
26.6
|
1.0
|
O
|
A:HOH413
|
3.2
|
14.2
|
1.0
|
HD22
|
A:LEU150
|
3.3
|
14.3
|
1.0
|
O
|
A:HOH521
|
3.3
|
34.3
|
1.0
|
OD1
|
A:ASN116
|
3.4
|
13.0
|
1.0
|
ND2
|
A:ASN12
|
3.4
|
9.9
|
1.0
|
CD2
|
A:HIS22
|
3.5
|
9.1
|
1.0
|
HD21
|
A:ASN116
|
3.6
|
10.4
|
1.0
|
NE2
|
A:HIS22
|
3.7
|
9.6
|
1.0
|
CB
|
A:MET69
|
3.7
|
8.6
|
1.0
|
HB2
|
A:MET69
|
3.8
|
8.7
|
1.0
|
HD22
|
A:ASN12
|
3.9
|
9.8
|
1.0
|
HG2
|
A:MET69
|
4.0
|
9.4
|
1.0
|
HD12
|
A:LEU150
|
4.0
|
16.9
|
1.0
|
ND2
|
A:ASN116
|
4.1
|
9.6
|
1.0
|
CG
|
A:ASN116
|
4.2
|
10.0
|
1.0
|
CD2
|
A:LEU150
|
4.2
|
14.3
|
1.0
|
OD1
|
A:ASN12
|
4.2
|
9.6
|
1.0
|
CG
|
A:ASN12
|
4.3
|
9.3
|
1.0
|
H
|
A:MET69
|
4.3
|
8.9
|
1.0
|
CG
|
A:MET69
|
4.4
|
8.1
|
1.0
|
H
|
A:ASN70
|
4.5
|
9.3
|
1.0
|
HD23
|
A:LEU150
|
4.6
|
14.3
|
1.0
|
HD21
|
A:LEU150
|
4.7
|
14.3
|
1.0
|
CG
|
A:HIS22
|
4.7
|
8.1
|
1.0
|
HD22
|
A:ASN116
|
4.8
|
10.4
|
1.0
|
HG3
|
A:MET69
|
4.8
|
9.4
|
1.0
|
CD1
|
A:LEU150
|
4.8
|
17.2
|
1.0
|
HG23
|
A:VAL149
|
4.9
|
12.0
|
1.0
|
HG
|
A:LEU150
|
4.9
|
13.9
|
1.0
|
O
|
A:HOH489
|
4.9
|
32.3
|
1.0
|
CA
|
A:MET69
|
4.9
|
8.4
|
1.0
|
N
|
A:MET69
|
4.9
|
8.8
|
1.0
|
CG
|
A:LEU150
|
4.9
|
13.9
|
1.0
|
HB3
|
A:ASN70
|
5.0
|
14.0
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 6jj1
Go back to
Chlorine Binding Sites List in 6jj1
Chlorine binding site 3 out
of 3 in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:16.6
occ:0.70
|
HH11
|
A:ARG133
|
2.5
|
16.4
|
1.0
|
HD2
|
A:ARG105
|
2.8
|
35.7
|
1.0
|
HB2
|
A:LYS107
|
3.0
|
12.8
|
1.0
|
O
|
A:HOH305
|
3.1
|
21.9
|
1.0
|
HD3
|
A:ARG133
|
3.2
|
12.6
|
1.0
|
HB3
|
A:ARG105
|
3.2
|
14.9
|
1.0
|
NH1
|
A:ARG133
|
3.2
|
20.4
|
1.0
|
HD2
|
A:LYS107
|
3.3
|
17.4
|
1.0
|
HH11
|
A:ARG105
|
3.4
|
53.9
|
1.0
|
HH12
|
A:ARG133
|
3.5
|
16.4
|
1.0
|
HB2
|
A:ARG105
|
3.6
|
14.8
|
1.0
|
CD
|
A:ARG105
|
3.7
|
53.7
|
1.0
|
CB
|
A:ARG105
|
3.8
|
10.8
|
1.0
|
CB
|
A:LYS107
|
3.9
|
10.6
|
1.0
|
HD3
|
A:ARG105
|
4.0
|
35.8
|
1.0
|
CD
|
A:ARG133
|
4.0
|
10.2
|
1.0
|
HD2
|
A:ARG133
|
4.0
|
12.5
|
1.0
|
HG3
|
A:LYS107
|
4.2
|
16.2
|
1.0
|
CD
|
A:LYS107
|
4.2
|
23.8
|
1.0
|
NH1
|
A:ARG105
|
4.2
|
63.3
|
1.0
|
CZ
|
A:ARG133
|
4.3
|
16.8
|
1.0
|
CG
|
A:LYS107
|
4.3
|
13.4
|
1.0
|
CG
|
A:ARG105
|
4.4
|
19.2
|
1.0
|
HA
|
A:LYS107
|
4.4
|
8.3
|
1.0
|
NE
|
A:ARG133
|
4.5
|
12.4
|
1.0
|
HB3
|
A:LYS107
|
4.6
|
12.8
|
1.0
|
HD21
|
A:ASN188
|
4.6
|
13.1
|
1.0
|
O
|
A:LEU106
|
4.6
|
10.6
|
1.0
|
CA
|
A:LYS107
|
4.6
|
8.3
|
1.0
|
O
|
A:HOH334
|
4.8
|
28.2
|
1.0
|
HG3
|
A:ARG105
|
4.8
|
14.3
|
1.0
|
NE
|
A:ARG105
|
4.8
|
67.2
|
1.0
|
HH12
|
A:ARG105
|
4.8
|
54.1
|
1.0
|
HE3
|
A:LYS107
|
4.8
|
21.2
|
1.0
|
HD3
|
A:LYS107
|
4.8
|
17.5
|
1.0
|
HZ1
|
A:LYS107
|
4.9
|
25.3
|
1.0
|
C
|
A:LEU106
|
4.9
|
7.2
|
1.0
|
N
|
A:LYS107
|
4.9
|
7.0
|
1.0
|
CZ
|
A:ARG105
|
4.9
|
79.3
|
1.0
|
|
Reference:
N.Iqbal,
P.Sharma,
A.Chaudhary,
S.Sharma,
T.P.Singh.
Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues To Be Published.
Page generated: Sun Jul 28 02:08:17 2024
|