Chlorine in PDB 6k8z: Pyridoxal Kinase From Leishmania Donovani in Complex with Adp

All present enzymatic activity of Pyridoxal Kinase From Leishmania Donovani in Complex with Adp:
2.7.1.35;

The structure of Pyridoxal Kinase From Leishmania Donovani in Complex with Adp, PDB code: 6k8z was solved by S.Are, S.Gatreddi, I.A.Qureshi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.98 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.630, 71.080, 77.310, 90.00, 98.93, 90.00
R / Rfree (%)	17.3 / 21.7

The structure of Pyridoxal Kinase From Leishmania Donovani in Complex with Adp also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Chlorine atom in the Pyridoxal Kinase From Leishmania Donovani in Complex with Adp (pdb code 6k8z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pyridoxal Kinase From Leishmania Donovani in Complex with Adp, PDB code: 6k8z:

Chlorine binding site 1 out of 1 in the Pyridoxal Kinase From Leishmania Donovani in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pyridoxal Kinase From Leishmania Donovani in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl405 b:19.1 occ:1.00 O A:HOH514 3.2 13.2 1.0 N A:LEU166 3.4 16.8 1.0 SD A:MET191 3.5 13.8 1.0 NE A:ARG199 3.7 13.4 1.0 CG A:MET191 3.7 15.2 1.0 CB A:LEU166 3.8 16.7 1.0 CD A:ARG199 3.9 13.0 1.0 CB A:ASP165 4.0 18.6 1.0 CA A:ASP165 4.1 17.0 1.0 C A:ASP165 4.2 16.6 1.0 CA A:LEU166 4.2 16.6 1.0 CE1 A:PHE189 4.5 14.9 1.0 CB A:MET191 4.6 15.2 1.0 OD1 A:ASP193 4.7 18.8 1.0 CZ A:ARG199 4.7 13.5 1.0 OD2 A:ASP193 5.0 18.8 1.0 NH2 A:ARG199 5.0 14.4 1.0

S.Are, S.Gatreddi, P.Jakkula, I.A.Qureshi. Structural Attributes and Substrate Specificity of Pyridoxal Kinase From Leishmania Donovani. Int.J.Biol.Macromol. V. 152 812 2020.
ISSN: ISSN 0141-8130
PubMed: 32105687
DOI: 10.1016/J.IJBIOMAC.2020.02.257