Chlorine in PDB 6kac: Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii

All present enzymatic activity of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii:
1.10.3.9;

The structure of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii also contains other interesting chemical elements:

Magnesium	(Mg)	198 atoms
Manganese	(Mn)	8 atoms
Iron	(Fe)	4 atoms
Calcium	(Ca)	2 atoms

The binding sites of Chlorine atom in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii (pdb code 6kac). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii, PDB code: 6kac:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:59.8 occ:1.00 N A:GLU333 3.3 41.9 1.0 O A:HOH1038 3.5 32.4 1.0 CA A:HIS332 3.7 35.7 1.0 OD1 A:ASN181 3.9 23.8 1.0 ND2 A:ASN181 3.9 23.8 1.0 CB A:HIS332 4.0 35.7 1.0 C A:HIS332 4.0 35.7 1.0 CD D:LYS317 4.1 28.9 1.0 CB D:LYS317 4.1 28.9 1.0 CA A:GLU333 4.2 41.9 1.0 CG D:LYS317 4.3 28.9 1.0 CD1 D:LEU321 4.3 27.1 1.0 CG A:ASN181 4.3 23.8 1.0 CG2 A:VAL185 4.4 26.0 1.0 NZ D:LYS317 4.5 28.9 1.0 CG A:GLU333 4.5 41.9 1.0 O A:MET331 4.6 36.2 1.0 CG D:LEU321 4.7 27.1 1.0 CD2 D:LEU321 4.7 27.1 1.0 N A:HIS332 4.9 35.7 1.0 CE D:LYS317 4.9 28.9 1.0 O D:LYS317 4.9 28.9 1.0 CA D:LYS317 5.0 28.9 1.0 CB A:GLU333 5.0 41.9 1.0

Chlorine binding site 2 out of 4 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:55.4 occ:1.00 N C:GLU342 3.2 40.4 1.0 N A:ASN338 3.3 40.9 1.0 CD2 A:PHE339 3.4 38.3 1.0 O A:HOH1039 3.5 37.1 1.0 CA C:GLY341 3.6 35.6 1.0 N A:PHE339 3.7 38.3 1.0 CA A:HIS337 3.8 41.7 1.0 C C:GLY341 3.9 35.6 1.0 CB A:PHE339 4.0 38.3 1.0 C A:HIS337 4.1 41.7 1.0 CG A:PHE339 4.1 38.3 1.0 CB C:GLU342 4.1 40.4 1.0 CA A:ASN338 4.2 40.9 1.0 CA C:GLU342 4.2 40.4 1.0 CE2 A:PHE339 4.2 38.3 1.0 O A:ALA336 4.2 38.9 1.0 CB A:ASN338 4.3 40.9 1.0 C A:ASN338 4.3 40.9 1.0 CA A:PHE339 4.4 38.3 1.0 O C:HOH1018 4.4 41.1 1.0 CB A:HIS337 4.6 41.7 1.0 O A:PHE339 4.6 38.3 1.0 N C:THR343 4.6 32.9 1.0 O C:GLY340 4.8 32.6 1.0 N A:HIS337 4.9 41.7 1.0 C C:GLU342 4.9 40.4 1.0 C A:ALA336 4.9 38.9 1.0 N C:GLY341 4.9 35.6 1.0 C A:PHE339 5.0 38.3 1.0 CD2 A:HIS337 5.0 41.7 1.0

Chlorine binding site 3 out of 4 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range: probe atom residue distance (Å) B Occ a:Cl403 b:59.2 occ:1.00 N a:GLU333 3.3 42.7 1.0 OD1 a:ASN181 3.7 23.7 1.0 CA a:HIS332 3.7 36.0 1.0 O a:HOH1038 3.7 33.5 1.0 ND2 a:ASN181 3.8 23.7 1.0 CB a:HIS332 3.9 36.0 1.0 C a:HIS332 4.0 36.0 1.0 CD d:LYS317 4.1 29.1 1.0 CB d:LYS317 4.2 29.1 1.0 CG a:ASN181 4.2 23.7 1.0 CG2 a:VAL185 4.3 26.0 1.0 CD1 d:LEU321 4.3 27.6 1.0 CA a:GLU333 4.3 42.7 1.0 CG d:LYS317 4.3 29.1 1.0 CG a:GLU333 4.5 42.7 1.0 NZ d:LYS317 4.5 29.1 1.0 CG d:LEU321 4.7 27.6 1.0 CD2 d:LEU321 4.8 27.6 1.0 O a:MET331 4.8 36.0 1.0 CE d:LYS317 4.9 29.1 1.0 N a:HIS332 5.0 36.0 1.0 CG a:HIS332 5.0 36.0 1.0 CB a:GLU333 5.0 42.7 1.0

Chlorine binding site 4 out of 4 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range: probe atom residue distance (Å) B Occ a:Cl404 b:53.6 occ:1.00 N c:GLU342 3.2 40.8 1.0 N a:ASN338 3.3 40.3 1.0 CD2 a:PHE339 3.4 37.8 1.0 O a:HOH1039 3.4 37.2 1.0 N a:PHE339 3.6 37.8 1.0 CA c:GLY341 3.6 36.2 1.0 CA a:HIS337 3.9 41.7 1.0 C c:GLY341 3.9 36.2 1.0 CB a:PHE339 4.0 37.8 1.0 CB c:GLU342 4.1 40.8 1.0 CG a:PHE339 4.1 37.8 1.0 C a:HIS337 4.1 41.7 1.0 CA c:GLU342 4.2 40.8 1.0 CA a:ASN338 4.2 40.3 1.0 O a:ALA336 4.2 38.7 1.0 CE2 a:PHE339 4.3 37.8 1.0 CB a:ASN338 4.3 40.3 1.0 C a:ASN338 4.3 40.3 1.0 CA a:PHE339 4.4 37.8 1.0 O c:HOH1018 4.4 40.4 1.0 O a:PHE339 4.5 37.8 1.0 N c:THR343 4.6 33.4 1.0 CB a:HIS337 4.6 41.7 1.0 O c:GLY340 4.9 33.1 1.0 C c:GLU342 4.9 40.8 1.0 N a:HIS337 4.9 41.7 1.0 C a:PHE339 4.9 37.8 1.0 C a:ALA336 4.9 38.7 1.0 N c:GLY341 4.9 36.2 1.0

X.Sheng, A.J.Li, D.F.Song, Z.F.Liu. Supramolecular Insights Intobasis of Light Harvesting For Photosystem II in Green Algae To Be Published.