Chlorine in PDB 6kmn: Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis

The structure of Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis, PDB code: 6kmn was solved by P.Dhankhar, V.Dalal, J.K.Mahto, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.15 / 2.44
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	58.841, 71.176, 101.014, 69.59, 83.58, 80.56
R / Rfree (%)	17.5 / 24.3

The structure of Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Chlorine atom in the Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis (pdb code 6kmn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis, PDB code: 6kmn:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:90.3 occ:1.00 O C:HOH611 3.0 56.9 1.0 N A:MET302 3.5 57.5 1.0 CG A:MET302 3.6 62.0 1.0 CB A:MET302 3.7 55.4 1.0 CA A:MET302 4.2 53.5 1.0 CB A:TYR301 4.4 67.1 1.0 C A:TYR301 4.5 56.2 1.0 CD1 A:TYR301 4.5 76.8 1.0 CA A:TYR301 4.5 59.9 1.0 CD1 C:LEU153 4.8 42.8 1.0 CB C:LEU153 5.0 45.2 1.0 CG A:TYR301 5.0 73.4 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Dye Decolorizing Peroxidase From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl403 b:96.6 occ:1.00 N D:LYS352 3.4 83.9 1.0 CA D:LYS351 3.5 83.0 1.0 CG D:LYS351 3.6 89.9 1.0 CG D:LYS352 3.6 94.8 1.0 C D:LYS351 4.0 82.6 1.0 CB D:LYS351 4.0 85.3 1.0 O D:CYS350 4.2 74.8 1.0 CB D:TYR9 4.3 77.2 1.0 N D:LYS351 4.6 80.5 1.0 N D:GLY10 4.6 69.1 1.0 CA D:LYS352 4.6 88.4 1.0 CB D:LYS352 4.6 90.0 1.0 CD D:LYS352 4.6 95.0 1.0 CE D:LYS352 4.7 94.3 1.0 C D:CYS350 4.8 75.6 1.0 CA D:GLY10 4.8 69.5 1.0 CD D:LYS351 4.9 92.7 1.0 C D:TYR9 4.9 70.6 1.0 NZ D:LYS352 5.0 93.6 1.0

P.Dhankhar, V.Dalal, J.K.Mahto, B.R.Gurjar, S.Tomar, A.K.Sharma, P.Kumar. Characterization of Dye-Decolorizing Peroxidase From Bacillus Subtilis. Arch.Biochem.Biophys. V. 693 08590 2020.
ISSN: ESSN 1096-0384
PubMed: 32971035
DOI: 10.1016/J.ABB.2020.108590