Chlorine in PDB 6kqc: Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis

Enzymatic activity of Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis

All present enzymatic activity of Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis:
2.4.2.22;

Protein crystallography data

The structure of Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis, PDB code: 6kqc was solved by S.Lankipalli, U.A.Ramagopal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.86 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.380, 96.650, 51.029, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 21.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis (pdb code 6kqc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis, PDB code: 6kqc:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6kqc

Go back to Chlorine Binding Sites List in 6kqc
Chlorine binding site 1 out of 3 in the Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:22.8
occ:1.00
N A:GLY94 3.1 23.8 1.0
N A:ALA97 3.3 16.7 1.0
N A:ASP92 3.4 21.9 1.0
CA A:GLY94 3.4 23.4 1.0
C A:GLY94 3.7 22.7 1.0
CB A:ALA97 3.8 16.8 1.0
N A:THR96 3.8 22.6 1.0
N A:GLY95 3.9 23.4 1.0
CA A:VAL91 3.9 15.9 1.0
CB A:THR96 3.9 24.4 1.0
N A:THR93 4.0 24.5 1.0
CB A:VAL91 4.1 16.3 1.0
CA A:ALA97 4.1 16.7 1.0
C A:VAL91 4.1 18.3 1.0
C A:THR96 4.2 19.0 1.0
CA A:THR96 4.2 21.5 1.0
C A:THR93 4.3 26.0 1.0
CA A:ASP92 4.3 23.7 1.0
C A:ASP92 4.3 24.8 1.0
OG1 A:THR93 4.3 28.0 1.0
CG1 A:VAL91 4.4 15.6 1.0
O A:GLY94 4.5 22.2 1.0
C A:GLY95 4.7 23.5 1.0
CB A:ASP92 4.7 27.6 1.0
CA A:THR93 4.7 26.4 1.0
OG1 A:THR96 4.7 28.7 1.0
CA A:GLY95 4.8 23.9 1.0
CG2 A:THR96 4.9 24.7 1.0
O A:LEU90 5.0 15.5 1.0

Chlorine binding site 2 out of 3 in 6kqc

Go back to Chlorine Binding Sites List in 6kqc
Chlorine binding site 2 out of 3 in the Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:19.2
occ:1.00
N B:GLY94 3.3 19.0 1.0
N B:ALA97 3.3 16.5 1.0
N B:ASP92 3.4 19.0 1.0
CA B:GLY94 3.5 19.4 1.0
N B:THR96 3.5 18.3 1.0
OD1 B:ASP92 3.5 30.8 1.0
CA B:VAL91 3.6 16.4 1.0
C B:GLY94 3.7 20.6 1.0
CB B:THR96 3.7 18.4 1.0
N B:GLY95 3.8 20.5 1.0
CB B:VAL91 3.9 17.0 1.0
CB B:ALA97 3.9 16.6 1.0
C B:VAL91 3.9 17.9 1.0
CA B:THR96 4.0 17.9 1.0
N B:THR93 4.0 19.7 1.0
C B:THR96 4.1 17.1 1.0
CA B:ALA97 4.2 16.5 1.0
CG1 B:VAL91 4.3 16.7 1.0
O B:GLY94 4.3 19.3 1.0
OG1 B:THR96 4.4 18.7 1.0
OG1 B:THR93 4.4 21.0 1.0
C B:GLY95 4.4 20.0 1.0
CG B:ASP92 4.4 28.6 1.0
CA B:ASP92 4.4 20.4 1.0
C B:THR93 4.5 19.6 1.0
C B:ASP92 4.5 20.7 1.0
CA B:GLY95 4.7 19.6 1.0
O B:LEU90 4.8 14.6 1.0
CG2 B:THR96 4.8 18.5 1.0
CA B:THR93 4.8 19.9 1.0
N B:VAL91 4.9 15.2 1.0

Chlorine binding site 3 out of 3 in 6kqc

Go back to Chlorine Binding Sites List in 6kqc
Chlorine binding site 3 out of 3 in the Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:33.6
occ:1.00
NE A:ARG53 3.4 35.8 1.0
NE B:ARG37 3.4 22.1 1.0
N B:ARG37 3.4 14.9 1.0
NH2 B:ARG37 3.7 23.4 1.0
NH2 A:ARG53 3.9 37.9 1.0
CZ B:ARG37 4.0 22.6 1.0
CB B:ARG37 4.0 15.9 1.0
CZ A:ARG53 4.1 38.9 1.0
CG B:ARG37 4.1 18.3 1.0
O B:SER36 4.1 16.8 1.0
C B:SER36 4.2 16.9 1.0
CD A:ARG53 4.3 32.0 1.0
CA B:ARG37 4.3 15.3 1.0
CD B:ARG37 4.4 20.8 1.0
N B:GLY38 4.6 13.6 1.0
O B:HOH368 4.9 20.9 1.0
CG A:ARG53 5.0 28.6 1.0
C B:ARG37 5.0 13.9 1.0

Reference:

S.Lankipalli, U.A.Ramagopal. Crystal Structure of E136F Mutant of Xanthine-Guanine Phosphoribosyltransferase From Yersinia Pestis To Be Published.
Page generated: Sat Dec 12 13:14:19 2020

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