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Chlorine in PDB 6krg: Crystal Structure of Sfgfp Y182TMSIPHE

Protein crystallography data

The structure of Crystal Structure of Sfgfp Y182TMSIPHE, PDB code: 6krg was solved by J.P.Sun, J.Y.Wang, Z.L.Zhu, Q.T.He, P.Xiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.72 / 1.40
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 68.565, 68.565, 119.260, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 17.3

Other elements in 6krg:

The structure of Crystal Structure of Sfgfp Y182TMSIPHE also contains other interesting chemical elements:

Silicon (Si) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Sfgfp Y182TMSIPHE (pdb code 6krg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Sfgfp Y182TMSIPHE, PDB code: 6krg:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6krg

Go back to Chlorine Binding Sites List in 6krg
Chlorine binding site 1 out of 3 in the Crystal Structure of Sfgfp Y182TMSIPHE


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sfgfp Y182TMSIPHE within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:50.4
occ:1.00
NA A:NA306 2.6 68.3 1.0
O A:HOH476 3.1 23.1 1.0
NE2 A:HIS139 3.1 21.9 1.0
CE A:LYS52 3.5 40.6 1.0
CA A:PRO54 3.6 16.9 1.0
CD A:LYS52 3.7 37.3 1.0
CD2 A:HIS139 3.9 18.7 1.0
O A:LEU53 3.9 17.1 1.0
CG A:LYS52 4.0 31.3 1.0
CE1 A:HIS139 4.0 18.5 1.0
CB A:PRO54 4.2 19.1 1.0
O A:PRO54 4.3 18.0 1.0
O A:HOH499 4.3 58.7 1.0
C A:PRO54 4.3 16.7 1.0
N A:PRO54 4.4 16.1 1.0
C A:LEU53 4.5 16.3 1.0
O A:HOH452 4.5 32.0 1.0
NZ A:LYS52 4.7 42.9 1.0
O A:HOH517 4.7 44.0 1.0
CB A:LYS52 4.9 24.8 1.0

Chlorine binding site 2 out of 3 in 6krg

Go back to Chlorine Binding Sites List in 6krg
Chlorine binding site 2 out of 3 in the Crystal Structure of Sfgfp Y182TMSIPHE


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Sfgfp Y182TMSIPHE within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:17.0
occ:1.00
NH1 A:ARG215 3.3 16.0 1.0
CA A:THR49 3.7 14.3 1.0
CD A:ARG215 3.7 16.9 1.0
CB A:THR49 3.9 14.6 1.0
O A:THR49 4.0 18.5 1.0
O A:HOH431 4.0 32.5 1.0
CG2 A:THR49 4.0 16.3 1.0
CD1 A:ILE47 4.0 15.8 1.0
C A:THR49 4.3 16.5 1.0
CZ A:ARG215 4.3 15.4 1.0
NE A:ARG215 4.5 15.4 1.0
O A:CYS48 4.6 17.7 1.0
N A:THR49 4.9 14.3 1.0
CG A:ARG215 5.0 16.9 1.0

Chlorine binding site 3 out of 3 in 6krg

Go back to Chlorine Binding Sites List in 6krg
Chlorine binding site 3 out of 3 in the Crystal Structure of Sfgfp Y182TMSIPHE


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Sfgfp Y182TMSIPHE within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:19.1
occ:1.00
O A:HOH501 3.0 29.5 1.0
O A:HOH550 3.1 24.7 1.0
O A:HOH485 3.1 20.3 1.0
N A:TRP57 3.2 13.3 1.0
O A:HOH506 3.5 27.3 1.0
CD1 A:TRP57 3.7 15.1 1.0
CD A:PRO58 3.8 14.0 1.0
CA A:PRO56 3.8 14.2 1.0
CB A:TRP57 3.8 14.3 1.0
C A:PRO56 4.0 13.4 1.0
CD1 A:TYR143 4.0 16.1 1.0
CA A:TRP57 4.1 13.2 1.0
CB A:PRO56 4.1 15.7 1.0
CG A:TRP57 4.1 14.5 1.0
O A:HOH520 4.2 43.5 1.0
O A:HOH552 4.4 18.4 1.0
CE1 A:TYR143 4.4 15.9 1.0
O A:HOH636 4.5 48.8 1.0
N A:PRO58 4.8 12.9 1.0
CG A:PRO58 4.9 14.6 1.0
NE1 A:TRP57 4.9 14.4 1.0
C A:TRP57 5.0 13.4 1.0

Reference:

J.P.Sun, J.Y.Wang, Z.L.Zhu, Q.T.He, P.Xiao. Crystal Structure of Tmsiphers Complexed with Tmsi To Be Published.
Page generated: Sun Jul 28 02:33:34 2024

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