Chlorine in PDB 6ky6: Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221
Protein crystallography data
The structure of Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221, PDB code: 6ky6
was solved by
C.Y.Zhang,
Z.Z.Min,
X.M.Liu,
C.Wang,
W.R.Tang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.23 /
2.07
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
84.128,
84.128,
185.765,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
21.7 /
25.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221
(pdb code 6ky6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221, PDB code: 6ky6:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 6ky6
Go back to
Chlorine Binding Sites List in 6ky6
Chlorine binding site 1 out
of 5 in the Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:63.9
occ:1.00
|
S1
|
B:EPR302
|
3.6
|
73.9
|
1.0
|
CZ2
|
A:TRP86
|
3.9
|
18.0
|
1.0
|
CG
|
B:GLU27
|
3.9
|
21.6
|
1.0
|
OE2
|
B:GLU27
|
4.1
|
28.8
|
1.0
|
CH2
|
A:TRP86
|
4.4
|
18.6
|
1.0
|
CG
|
A:PRO87
|
4.4
|
14.4
|
1.0
|
CE2
|
B:TYR57
|
4.4
|
25.8
|
1.0
|
CD
|
B:GLU27
|
4.5
|
23.9
|
1.0
|
CE2
|
A:TRP86
|
4.6
|
17.5
|
1.0
|
C12
|
B:EPR302
|
4.6
|
70.9
|
1.0
|
CD1
|
A:TRP118
|
4.6
|
21.4
|
1.0
|
CG
|
A:TRP118
|
4.7
|
18.6
|
1.0
|
S
|
B:EPR302
|
4.7
|
67.8
|
1.0
|
OH
|
B:TYR57
|
4.8
|
29.0
|
1.0
|
CD2
|
A:TRP118
|
4.9
|
21.1
|
1.0
|
NE1
|
A:TRP118
|
5.0
|
22.0
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 6ky6
Go back to
Chlorine Binding Sites List in 6ky6
Chlorine binding site 2 out
of 5 in the Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:60.1
occ:1.00
|
OH
|
A:TYR49
|
3.0
|
24.1
|
1.0
|
ND2
|
A:ASN254
|
3.1
|
18.2
|
1.0
|
CE2
|
A:TYR49
|
3.4
|
23.9
|
1.0
|
CB
|
A:ALA245
|
3.4
|
38.6
|
1.0
|
CZ
|
A:TYR49
|
3.4
|
22.4
|
1.0
|
CB
|
A:ASN254
|
3.4
|
23.5
|
1.0
|
CG
|
A:PRO243
|
3.6
|
22.1
|
1.0
|
CG
|
A:ASN254
|
3.7
|
23.0
|
1.0
|
CB
|
A:PRO243
|
4.0
|
21.9
|
1.0
|
CD2
|
A:LEU251
|
4.0
|
27.2
|
1.0
|
O
|
A:PRO243
|
4.1
|
25.3
|
1.0
|
CA
|
A:LEU251
|
4.3
|
24.9
|
1.0
|
N
|
A:ALA245
|
4.4
|
34.0
|
1.0
|
CD2
|
A:TYR49
|
4.4
|
23.1
|
1.0
|
O
|
A:HIS250
|
4.5
|
21.0
|
1.0
|
CA
|
A:ALA245
|
4.5
|
36.5
|
1.0
|
CE1
|
A:TYR49
|
4.6
|
21.8
|
1.0
|
C
|
A:PRO243
|
4.6
|
23.6
|
1.0
|
CD
|
A:PRO243
|
4.6
|
20.9
|
1.0
|
O
|
A:GLY17
|
4.7
|
24.8
|
1.0
|
O
|
A:LEU251
|
4.8
|
22.8
|
1.0
|
CA
|
A:PRO243
|
4.9
|
21.7
|
1.0
|
N
|
A:LEU251
|
4.9
|
22.7
|
1.0
|
CA
|
A:ASN254
|
4.9
|
25.1
|
1.0
|
C
|
A:LYS244
|
4.9
|
28.6
|
1.0
|
C
|
A:HIS250
|
4.9
|
22.1
|
1.0
|
OD1
|
A:ASN254
|
5.0
|
21.8
|
1.0
|
CG
|
A:LEU251
|
5.0
|
26.0
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 6ky6
Go back to
Chlorine Binding Sites List in 6ky6
Chlorine binding site 3 out
of 5 in the Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:65.3
occ:1.00
|
S1
|
A:EPR302
|
3.6
|
70.0
|
1.0
|
CZ2
|
B:TRP86
|
3.9
|
20.4
|
1.0
|
CG
|
A:GLU27
|
3.9
|
21.0
|
1.0
|
OE2
|
A:GLU27
|
4.1
|
31.0
|
1.0
|
CH2
|
B:TRP86
|
4.3
|
20.9
|
1.0
|
CE2
|
A:TYR57
|
4.4
|
26.1
|
1.0
|
CG
|
B:PRO87
|
4.4
|
15.4
|
1.0
|
CD
|
A:GLU27
|
4.6
|
24.2
|
1.0
|
CE2
|
B:TRP86
|
4.6
|
19.8
|
1.0
|
CD1
|
B:TRP118
|
4.6
|
21.3
|
1.0
|
C12
|
A:EPR302
|
4.6
|
68.1
|
1.0
|
CG
|
B:TRP118
|
4.6
|
18.6
|
1.0
|
S
|
A:EPR302
|
4.8
|
62.2
|
1.0
|
OH
|
A:TYR57
|
4.9
|
30.7
|
1.0
|
CD2
|
B:TRP118
|
4.9
|
21.3
|
1.0
|
NE1
|
B:TRP118
|
4.9
|
22.6
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 6ky6
Go back to
Chlorine Binding Sites List in 6ky6
Chlorine binding site 4 out
of 5 in the Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl304
b:62.0
occ:1.00
|
O
|
B:HOH500
|
2.7
|
14.5
|
1.0
|
O
|
B:ASN120
|
3.3
|
17.5
|
1.0
|
O
|
B:HOH466
|
3.5
|
34.8
|
1.0
|
C
|
B:ASN120
|
3.7
|
18.1
|
1.0
|
CA
|
B:PRO121
|
3.8
|
19.7
|
1.0
|
O
|
B:ILE123
|
3.9
|
17.7
|
1.0
|
N
|
B:PRO121
|
3.9
|
19.5
|
1.0
|
O
|
B:HOH541
|
4.0
|
45.1
|
1.0
|
O
|
B:HOH467
|
4.0
|
13.9
|
1.0
|
N
|
B:ASN120
|
4.1
|
16.6
|
1.0
|
CB
|
B:PRO119
|
4.3
|
15.4
|
1.0
|
CB
|
B:LEU125
|
4.5
|
21.4
|
1.0
|
CA
|
B:ASN120
|
4.6
|
16.1
|
1.0
|
CD1
|
B:LEU125
|
4.6
|
23.6
|
1.0
|
C
|
B:PRO121
|
4.7
|
21.4
|
1.0
|
CA
|
B:PRO119
|
4.7
|
14.8
|
1.0
|
CD1
|
B:LEU153
|
4.8
|
20.8
|
1.0
|
N
|
B:LEU125
|
4.8
|
18.0
|
1.0
|
C
|
B:PRO119
|
4.8
|
15.1
|
1.0
|
O
|
B:PRO121
|
4.9
|
23.4
|
1.0
|
CB
|
B:PRO121
|
4.9
|
19.9
|
1.0
|
CD2
|
B:LEU125
|
4.9
|
25.9
|
1.0
|
CG
|
B:LEU125
|
4.9
|
24.1
|
1.0
|
CA
|
B:LEU125
|
4.9
|
21.0
|
1.0
|
CD2
|
B:LEU153
|
5.0
|
22.8
|
1.0
|
CD
|
B:PRO121
|
5.0
|
19.6
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 6ky6
Go back to
Chlorine Binding Sites List in 6ky6
Chlorine binding site 5 out
of 5 in the Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl305
b:72.8
occ:1.00
|
N
|
B:MET1
|
3.0
|
43.5
|
1.0
|
O
|
B:HOH521
|
3.4
|
55.4
|
1.0
|
CA
|
B:MET1
|
4.4
|
42.2
|
1.0
|
O
|
B:MET1
|
4.8
|
41.6
|
1.0
|
C
|
B:MET1
|
5.0
|
42.1
|
1.0
|
CB
|
B:MET1
|
5.0
|
42.1
|
1.0
|
|
Reference:
C.Y.Zhang,
Z.Z.Min,
X.M.Liu,
C.Wang,
W.R.Tang.
Crystal Struture of A Thermostable Aldo-Keto Reductase TM1743 in Complexs with Inhibitor Epalrestat in Space Group P3221 To Be Published.
Page generated: Sun Jul 28 02:39:38 2024
|