Chlorine in PDB 6lf1: Sevil, A GM1B/Asialo-GM1 Binding Lectin

The structure of Sevil, A GM1B/Asialo-GM1 Binding Lectin, PDB code: 6lf1 was solved by K.Kamata, Y.Ozeki, S.-Y.Park, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.11 / 1.70
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.216, 86.216, 67.627, 90.00, 90.00, 120.00
R / Rfree (%)	19.3 / 22.8

The binding sites of Chlorine atom in the Sevil, A GM1B/Asialo-GM1 Binding Lectin (pdb code 6lf1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Sevil, A GM1B/Asialo-GM1 Binding Lectin, PDB code: 6lf1:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Sevil, A GM1B/Asialo-GM1 Binding Lectin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sevil, A GM1B/Asialo-GM1 Binding Lectin within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:25.3 occ:1.00 OD1 B:ASP39 3.0 21.8 1.0 NE2 B:GLN40 3.2 19.8 1.0 CG B:PHE21 3.7 18.7 1.0 OD2 B:ASP39 3.7 22.8 1.0 CG B:ASP39 3.7 21.1 1.0 CD2 B:TYR37 3.8 20.2 1.0 CB B:PHE21 3.9 17.4 1.0 CD1 B:PHE21 4.0 19.4 1.0 CB B:PHE32 4.0 21.6 1.0 CD2 B:PHE21 4.0 19.5 1.0 CG B:GLN40 4.1 17.2 1.0 CG B:PHE32 4.1 19.9 1.0 CD2 B:PHE32 4.1 19.6 1.0 CB B:TYR37 4.1 20.0 1.0 CD B:GLN40 4.1 18.2 1.0 CG B:TYR37 4.4 19.4 1.0 CE1 B:PHE21 4.5 21.1 1.0 CE2 B:PHE21 4.6 20.2 1.0 CE2 B:TYR37 4.7 24.9 1.0 CZ B:PHE21 4.8 22.1 1.0 CD1 B:PHE32 4.9 23.0 1.0 CE2 B:PHE32 4.9 23.6 1.0

Chlorine binding site 2 out of 2 in the Sevil, A GM1B/Asialo-GM1 Binding Lectin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Sevil, A GM1B/Asialo-GM1 Binding Lectin within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl202 b:32.2 occ:1.00 OD2 B:ASP28 3.3 29.6 1.0 NH1 B:ARG26 3.4 30.1 1.0 CB B:ASP28 3.5 21.4 1.0 CG B:ASN23 3.8 25.1 1.0 CB B:ASN23 3.8 22.5 1.0 CB B:ARG26 3.8 26.0 1.0 CG B:ASP28 3.9 22.6 1.0 OD1 B:ASN23 3.9 22.5 1.0 CD B:ARG26 3.9 25.3 1.0 CG B:ARG26 4.0 23.0 1.0 ND2 B:ASN23 4.3 22.2 1.0 CZ B:ARG26 4.5 31.4 1.0 NE B:ARG26 4.7 26.4 1.0 CA B:ASP28 4.9 21.9 1.0 CA B:ARG26 4.9 24.1 1.0

K.Kamata, Y.Ozeki, S.-Y.Park, J.R.H.Tame. The Structure of Sevil, A GM1B/Asialo-GM1 Binding R-Type Lectin From the Mussel Mytilisepta Virgata To Be Published.