Chlorine in PDB 6lqw: Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.

Protein crystallography data

The structure of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution., PDB code: 6lqw was solved by V.Viswanathan, S.N.Pandey, N.Ahmad, C.Rani, P.Sharma, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.64 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.295, 96.732, 83.931, 90.00, 90.30, 90.00
R / Rfree (%) 21.2 / 29.2

Other elements in 6lqw:

The structure of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. (pdb code 6lqw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution., PDB code: 6lqw:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6lqw

Go back to Chlorine Binding Sites List in 6lqw
Chlorine binding site 1 out of 2 in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:34.9
occ:1.00
ND2 A:ASN95 3.4 40.2 1.0
O5 A:NAG602 3.5 41.8 1.0
NH1 A:ARG96 3.5 25.1 1.0
O6 A:NAG602 3.6 32.6 1.0
C1 A:NAG602 3.8 38.4 1.0
NH1 A:ARG506 3.9 23.4 1.0
NH2 A:ARG96 4.0 25.6 1.0
C2 A:NAG602 4.0 44.1 1.0
NH2 A:ARG506 4.1 23.9 1.0
CA A:ARG504 4.1 22.9 1.0
CZ A:ARG96 4.3 26.5 1.0
O7 A:NAG602 4.3 33.6 1.0
CZ A:ARG506 4.4 24.5 1.0
C5 A:NAG602 4.5 45.0 1.0
CG A:ASN95 4.6 31.5 1.0
C6 A:NAG602 4.6 40.5 1.0
C A:ARG504 4.6 24.5 1.0
CB A:ARG504 4.7 28.4 1.0
O A:ARG504 4.7 26.0 1.0
CB A:ASN95 4.8 31.7 1.0
C4 A:NAG602 4.9 49.9 1.0
N2 A:NAG602 4.9 45.6 1.0
CG A:ARG504 4.9 30.8 1.0
C7 A:NAG602 4.9 44.0 1.0

Chlorine binding site 2 out of 2 in 6lqw

Go back to Chlorine Binding Sites List in 6lqw
Chlorine binding site 2 out of 2 in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl608

b:46.7
occ:1.00
O5 B:NAG604 3.5 45.1 1.0
C6 B:NAG604 3.9 52.2 1.0
NH1 B:ARG506 4.0 26.0 1.0
NH1 B:ARG96 4.1 29.6 1.0
NH2 B:ARG506 4.2 17.9 1.0
ND2 B:ASN95 4.2 39.6 1.0
C5 B:NAG604 4.3 52.0 1.0
NH2 B:ARG96 4.4 35.2 1.0
C1 B:NAG604 4.5 40.9 1.0
CZ B:ARG506 4.5 32.5 1.0
CA B:ARG504 4.6 29.5 1.0
CZ B:ARG96 4.8 34.0 1.0
C4 B:NAG604 4.9 58.2 1.0
C B:ARG504 5.0 29.0 1.0
O B:ARG504 5.0 32.5 1.0

Reference:

V.Viswanathan, S.N.Pandey, P.Sharma, C.Rani, N.Ahmad, S.Sharma, T.P.Singh. Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. To Be Published.
Page generated: Sat Dec 12 13:18:51 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy