Chlorine in PDB 6lr6: The Crystal Structure of Human Cytoplasmic Lrs

All present enzymatic activity of The Crystal Structure of Human Cytoplasmic Lrs:
6.1.1.4;

The structure of The Crystal Structure of Human Cytoplasmic Lrs, PDB code: 6lr6 was solved by R.J.Liu, T.Long, H.Li, J.Li, J.H.Zhao, J.Z.Lin, A.Palencia, M.Z.Wang, S.Cusack, E.D.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.41 / 3.01
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	88.854, 95.798, 682.388, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 26

The binding sites of Chlorine atom in the The Crystal Structure of Human Cytoplasmic Lrs (pdb code 6lr6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of Human Cytoplasmic Lrs, PDB code: 6lr6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the The Crystal Structure of Human Cytoplasmic Lrs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Human Cytoplasmic Lrs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1201 b:0.6 occ:1.00 CL A:A2H1201 0.0 0.6 1.0 C13 A:A2H1201 1.8 0.1 1.0 C14 A:A2H1201 2.8 99.9 1.0 C11 A:A2H1201 2.8 0.5 1.0 CB A:VAL392 3.1 0.0 1.0 C10 A:A2H1201 3.3 93.8 1.0 CG1 A:VAL392 3.3 0.2 1.0 CG2 A:VAL392 3.4 96.1 1.0 OG1 A:THR298 3.5 97.5 1.0 C17 A:A2H1201 3.6 98.2 1.0 CB A:THR298 3.7 96.6 1.0 CG2 A:THR298 3.8 97.2 1.0 CB A:SER396 4.0 0.5 1.0 C15 A:A2H1201 4.1 98.1 1.0 C12 A:A2H1201 4.1 0.8 1.0 O A:ASP395 4.2 0.3 1.0 C A:ASP395 4.3 0.0 1.0 N18 A:A2H1201 4.4 97.8 1.0 N A:SER396 4.4 0.5 1.0 CA A:VAL392 4.6 0.3 1.0 O A:VAL392 4.6 0.2 1.0 C16 A:A2H1201 4.6 0.8 1.0 O1 A:A2H1201 4.6 96.6 1.0 CA A:SER396 4.7 0.3 1.0 CB A:ASP395 4.7 0.8 1.0 OG A:SER396 4.7 97.0 1.0 NE A:ARG295 5.0 88.5 1.0 CZ A:ARG295 5.0 90.2 1.0 CB A:ARG295 5.0 93.1 1.0 CA A:ASP395 5.0 0.9 1.0

Chlorine binding site 2 out of 2 in the The Crystal Structure of Human Cytoplasmic Lrs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Human Cytoplasmic Lrs within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1201 b:53.4 occ:1.00 CL B:A2H1201 0.0 53.4 1.0 C13 B:A2H1201 1.8 42.6 1.0 C14 B:A2H1201 2.8 33.6 1.0 C11 B:A2H1201 2.8 45.9 1.0 C10 B:A2H1201 3.2 34.8 1.0 OG1 B:THR298 3.3 32.2 1.0 C17 B:A2H1201 3.5 34.1 1.0 CB B:VAL392 3.6 35.3 1.0 CB B:THR298 3.8 30.8 1.0 CB B:SER396 3.8 45.4 1.0 CG2 B:THR298 3.9 35.0 1.0 O B:VAL392 4.1 37.4 1.0 C12 B:A2H1201 4.1 44.1 1.0 C15 B:A2H1201 4.1 36.5 1.0 CG2 B:VAL392 4.1 37.1 1.0 CG1 B:VAL392 4.1 36.5 1.0 N18 B:A2H1201 4.2 45.7 1.0 C B:ASP395 4.2 45.9 1.0 N B:SER396 4.2 45.5 1.0 O B:ASP395 4.2 47.2 1.0 CB B:ASP395 4.3 49.7 1.0 CA B:SER396 4.5 43.5 1.0 O1 B:A2H1201 4.6 31.0 1.0 CB B:ARG295 4.6 34.5 1.0 C16 B:A2H1201 4.6 42.2 1.0 CD B:ARG295 4.6 46.0 1.0 CA B:VAL392 4.7 37.4 1.0 OG B:SER396 4.7 45.8 1.0 CA B:ASP395 4.8 46.7 1.0 C B:VAL392 4.8 38.9 1.0

R.J.Liu, T.Long, E.D.Wang. Molecular Basis of the Multifaceted Functions of Human Leucyl-Trna Synthetase in Protein Synthesis and Beyond Nucleic Acids Res. 2020.
ISSN: ESSN 1362-4962