Chlorine in PDB 6lt5: Lysozyme Protected By Alginate Gel

All present enzymatic activity of Lysozyme Protected By Alginate Gel:
3.2.1.17;

The structure of Lysozyme Protected By Alginate Gel, PDB code: 6lt5 was solved by F.Tomoike, S.Morita, T.Nagae, T.Okada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.84 / 1.32
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.097, 79.097, 36.962, 90, 90, 90
R / Rfree (%)	17 / 18

The structure of Lysozyme Protected By Alginate Gel also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Lysozyme Protected By Alginate Gel (pdb code 6lt5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Lysozyme Protected By Alginate Gel, PDB code: 6lt5:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Lysozyme Protected By Alginate Gel


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lysozyme Protected By Alginate Gel within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:12.9 occ:1.00 OH A:TYR23 3.0 10.1 1.0 O A:HOH346 3.3 12.6 1.0 CE2 A:TYR23 3.7 9.2 1.0 CZ A:TYR23 3.7 9.9 1.0 CA A:GLY104 4.1 10.1 1.0 O A:ARG21 4.6 11.1 1.0 N A:GLY104 4.6 10.1 1.0 O A:HOH389 4.7 29.1 1.0 CE1 A:TYR23 4.9 9.4 1.0 CD2 A:TYR23 4.9 9.1 1.0

Chlorine binding site 2 out of 5 in the Lysozyme Protected By Alginate Gel


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lysozyme Protected By Alginate Gel within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:13.5 occ:1.00 O A:HOH356 3.1 10.1 1.0 O A:HOH427 3.2 18.8 1.0 N A:THR69 3.3 10.5 1.0 O A:HOH423 3.3 30.9 1.0 O A:THR69 3.3 11.5 1.0 O A:HOH371 3.4 27.1 1.0 N A:ARG68 3.5 11.1 1.0 C A:GLY67 3.5 12.4 1.0 CA A:GLY67 3.6 10.8 1.0 OG A:SER72 3.6 11.8 1.0 N A:GLY67 3.6 10.0 1.0 C A:THR69 3.7 11.6 1.0 OD1 A:ASN65 3.8 11.7 1.0 CA A:THR69 3.9 10.8 1.0 O A:HOH383 4.0 13.4 1.0 O A:GLY67 4.1 14.9 1.0 C A:ARG68 4.3 12.9 1.0 CB A:THR69 4.3 11.4 1.0 OD1 A:ASP66 4.3 9.6 1.0 CA A:ARG68 4.3 11.9 1.0 N A:PRO70 4.6 10.9 1.0 NA A:NA201 4.7 9.8 0.9 C A:ASP66 4.8 10.4 1.0 O A:HOH385 4.8 22.1 0.5 CB A:SER72 4.9 12.5 1.0 OG1 A:THR69 4.9 10.0 1.0 N A:ASP66 4.9 8.8 1.0 CG A:ASN65 5.0 12.6 1.0

Chlorine binding site 3 out of 5 in the Lysozyme Protected By Alginate Gel


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Lysozyme Protected By Alginate Gel within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:18.8 occ:1.00 O A:HOH398 3.1 18.2 1.0 ND2 A:ASN65 3.2 13.9 1.0 CB A:PRO79 3.7 11.9 1.0 CA A:PRO79 3.7 10.5 1.0 CB A:ASN65 3.9 11.2 1.0 N A:PRO79 3.9 10.8 1.0 CG A:ASN65 4.0 12.6 1.0 CD A:PRO79 4.3 10.8 1.0 O A:ASN65 4.3 9.0 1.0 CG A:PRO79 4.4 13.3 1.0 C A:ILE78 4.5 10.9 1.0 O A:ILE78 4.6 10.1 1.0 ND2 A:ASN74 4.9 13.1 1.0 C A:ASN65 5.0 8.9 1.0 CA A:ASN65 5.0 8.8 1.0

Chlorine binding site 4 out of 5 in the Lysozyme Protected By Alginate Gel


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Lysozyme Protected By Alginate Gel within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:20.2 occ:1.00 O A:HOH428 3.3 27.5 1.0 O A:HOH426 3.4 26.2 1.0 NZ A:LYS33 3.4 17.0 1.0 CE2 A:PHE38 3.7 11.5 1.0 CZ3 A:TRP123 3.9 15.0 1.0 CE A:LYS33 3.9 14.4 1.0 CD A:LYS33 4.1 11.6 1.0 O A:HOH378 4.2 25.4 1.0 CD A:ARG5 4.3 14.6 1.0 CB A:ARG5 4.3 12.2 1.0 CZ A:PHE38 4.3 11.7 1.0 CD2 A:PHE38 4.6 10.2 1.0 CG A:ARG5 4.7 12.8 1.0 CE3 A:TRP123 4.8 12.3 1.0 CH2 A:TRP123 4.8 15.6 1.0 NE A:ARG5 4.9 17.3 1.0 C3 A:GOL208 4.9 24.4 1.0

Chlorine binding site 5 out of 5 in the Lysozyme Protected By Alginate Gel


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Lysozyme Protected By Alginate Gel within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl206 b:18.2 occ:1.00 OG A:SER24 3.0 14.4 1.0 N A:GLY26 3.1 10.0 1.0 CB A:SER24 3.5 12.2 1.0 CA A:GLY26 3.5 10.3 1.0 CA A:GLN121 3.6 16.2 1.0 CB A:GLN121 3.9 21.1 1.0 N A:GLN121 3.9 14.2 1.0 CD1 A:ILE124 4.0 23.3 1.0 N A:LEU25 4.2 11.5 1.0 O A:VAL120 4.3 12.6 1.0 C A:VAL120 4.3 12.1 1.0 CG1 A:ILE124 4.3 19.0 1.0 C A:SER24 4.3 10.2 1.0 C A:LEU25 4.3 10.8 1.0 CG2 A:VAL120 4.4 14.2 1.0 C A:GLY26 4.5 9.4 1.0 CA A:SER24 4.5 11.1 1.0 N A:ASN27 4.6 8.7 1.0 CA A:LEU25 4.7 11.5 1.0 O A:SER24 4.8 11.2 1.0 C A:GLN121 4.8 13.3 1.0 O A:HOH417 5.0 21.3 1.0

S.Morita, T.Itabashi, T.Nagae, S.Takeuchi, T.Okada, F.Tomoike. Post-Crystallization Protection of Protein Crystals To Be Published.