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Chlorine in PDB 6m7z: A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole

Enzymatic activity of A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole

All present enzymatic activity of A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole:
2.7.99.1;

Protein crystallography data

The structure of A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole, PDB code: 6m7z was solved by T.Beraki, D.M.Borek, M.L.Reese, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.70 / 2.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 171.466, 123.068, 86.615, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 23.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole (pdb code 6m7z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole, PDB code: 6m7z:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6m7z

Go back to Chlorine Binding Sites List in 6m7z
Chlorine binding site 1 out of 3 in the A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl407

b:59.8
occ:1.00
 O C:ASP86 3.3 48.2 1.0
ND2 C:ASN90 3.8 37.5 1.0
CB C:ARG89 4.1 65.2 1.0
CG1 C:ILE85 4.2 28.4 1.0
CB C:GLU118 4.3 49.5 1.0
O C:ARG89 4.3 46.4 1.0
C C:ASP86 4.4 39.5 1.0
O C:GLU118 4.4 40.6 1.0
C C:GLU118 4.4 42.6 1.0
N C:ASP86 4.5 34.0 1.0
CB C:ASN90 4.5 39.3 1.0
C C:ARG89 4.5 48.7 1.0
N C:LEU119 4.5 39.6 1.0
CB C:ASP86 4.5 45.2 1.0
CD1 C:LEU119 4.6 35.5 1.0
CA C:LEU119 4.6 37.1 1.0
CD2 C:LEU122 4.6 47.1 1.0
CG C:ASN90 4.6 39.6 1.0
CD1 C:ILE85 4.7 29.2 1.0
CA C:ASP86 4.7 37.9 1.0
CA C:ARG89 4.8 55.5 1.0
CB C:LEU119 4.9 36.3 1.0
N C:ASN90 5.0 44.3 1.0
CB C:LEU122 5.0 39.6 1.0

Chlorine binding site 2 out of 3 in 6m7z

Go back to Chlorine Binding Sites List in 6m7z
Chlorine binding site 2 out of 3 in the A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl403

b:50.0
occ:1.00
 OH E:TYR181 3.2 23.3 1.0
N E:ALA177 3.5 24.8 1.0
CA E:GLY176 3.6 22.9 1.0
N E:PHE178 3.8 28.1 1.0
N E:LEU179 3.8 23.1 1.0
CB E:LEU179 3.9 22.5 1.0
C E:GLY176 3.9 24.5 1.0
CG E:LEU179 3.9 22.8 1.0
CD1 E:LEU179 4.0 22.9 1.0
CE1 E:TYR181 4.0 22.8 1.0
CD E:ARG89 4.1 57.7 1.0
CZ E:TYR181 4.1 22.9 1.0
NH1 E:ARG89 4.2 81.4 1.0
CD1 E:LEU93 4.2 32.5 1.0
CA E:LEU179 4.4 22.6 1.0
N E:GLY176 4.5 22.9 1.0
CA E:ALA177 4.5 25.7 1.0
O E:LEU179 4.6 22.9 1.0
C E:PHE178 4.6 25.9 1.0
C E:ALA177 4.6 26.2 1.0
CA E:PHE178 4.6 29.6 1.0
CG E:LEU93 4.7 30.2 1.0
CD2 E:PHE178 4.7 51.6 1.0
CB E:ALA177 4.7 25.5 1.0
CD2 E:LEU93 4.8 30.8 1.0
O E:GLY176 4.9 25.4 1.0
C E:LEU179 4.9 22.6 1.0
NE E:ARG89 4.9 56.6 1.0
CG E:ARG89 5.0 54.5 1.0

Chlorine binding site 3 out of 3 in 6m7z

Go back to Chlorine Binding Sites List in 6m7z
Chlorine binding site 3 out of 3 in the A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of A Divergent Kinase Lacking the Glycine-Rich Loop Regulates Membrane Ultrastructure of the Toxoplasma Parasitophorous Vacuole within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl404

b:62.7
occ:1.00
 CD2 E:TYR293 4.1 23.7 1.0
NH2 E:ARG342 4.2 29.3 1.0
CG E:TYR293 4.3 24.3 1.0
NH1 E:ARG342 4.4 28.6 1.0
CB E:SER290 4.5 22.9 1.0
CE2 E:TYR293 4.5 24.2 1.0
CB E:TYR293 4.5 24.0 1.0
CZ E:ARG342 4.7 29.0 1.0
CA E:SER290 4.8 23.1 1.0
CD1 E:TYR293 4.8 25.4 1.0

Reference:

T.Beraki, X.Hu, M.Broncel, J.C.Young, W.J.O'shaughnessy, D.Borek, M.Treeck, M.L.Reese. Divergent Kinase Regulates Membrane Ultrastructure of Thetoxoplasmaparasitophorous Vacuole. Proc. Natl. Acad. Sci. V. 116 6361 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30850550
DOI: 10.1073/PNAS.1816161116
Page generated: Sun Jul 28 03:07:24 2024

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