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Chlorine in PDB 6m9m: Streptococcus Mutans ALKD2 Bound to Inosine-5'-Monophosphate

Protein crystallography data

The structure of Streptococcus Mutans ALKD2 Bound to Inosine-5'-Monophosphate, PDB code: 6m9m was solved by B.F.Eichman, R.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.41 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.152, 63.041, 65.546, 90.00, 90.00, 90.00
R / Rfree (%) 13.6 / 17.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Streptococcus Mutans ALKD2 Bound to Inosine-5'-Monophosphate (pdb code 6m9m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Streptococcus Mutans ALKD2 Bound to Inosine-5'-Monophosphate, PDB code: 6m9m:

Chlorine binding site 1 out of 1 in 6m9m

Go back to Chlorine Binding Sites List in 6m9m
Chlorine binding site 1 out of 1 in the Streptococcus Mutans ALKD2 Bound to Inosine-5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Streptococcus Mutans ALKD2 Bound to Inosine-5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:16.4
occ:1.00
H A:ILE131 2.4 12.2 1.0
HD22 A:ASN134 2.5 14.8 1.0
HH12 A:ARG135 2.6 12.7 0.9
O A:HOH700 3.1 32.5 1.0
HB A:ILE131 3.1 12.4 1.0
N A:ILE131 3.2 10.1 1.0
O A:HOH628 3.3 30.4 1.0
HB2 A:ASN134 3.3 16.5 1.0
NH1 A:ARG135 3.4 10.6 0.9
ND2 A:ASN134 3.4 12.3 1.0
HG13 A:ILE131 3.6 13.6 1.0
HH11 A:ARG135 3.7 12.7 0.9
HD12 A:ILE131 3.8 14.2 1.0
CB A:ILE131 3.8 10.3 1.0
HB3 A:ASN134 3.9 16.5 1.0
CB A:ASN134 3.9 13.7 1.0
O A:ARG130 3.9 10.9 1.0
HD21 A:ASN134 3.9 14.8 1.0
C A:ARG130 4.0 9.9 1.0
HH22 A:ARG135 4.0 15.5 0.9
CA A:ILE131 4.1 10.1 1.0
CG1 A:ILE131 4.1 11.3 1.0
O A:HOH716 4.1 43.5 1.0
CG A:ASN134 4.1 14.0 1.0
O A:ILE131 4.2 9.7 1.0
O A:HOH671 4.2 42.4 1.0
CD1 A:ILE131 4.4 11.8 1.0
CZ A:ARG135 4.4 12.1 0.9
NH2 A:ARG135 4.6 12.9 0.9
C A:ILE131 4.6 9.5 1.0
HA A:ILE131 4.9 12.1 1.0
HD11 A:ILE131 4.9 14.2 1.0
HG12 A:ILE131 5.0 13.6 1.0

Reference:

R.Shi, X.X.Shen, A.Rokas, B.F.Eichman. Structural Biology of the Heat-Like Repeat Family of Dna Glycosylases. Bioessays V. 40 00133 2018.
ISSN: ESSN 1521-1878
PubMed: 30264543
DOI: 10.1002/BIES.201800133
Page generated: Sun Jul 28 03:07:23 2024

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