Chlorine in PDB 6mn8: Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide

Protein crystallography data

The structure of Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide, PDB code: 6mn8 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.28 / 2.35
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 159.720, 159.720, 143.720, 90.00, 90.00, 120.00
R / Rfree (%) 14.2 / 18

Other elements in 6mn8:

The structure of Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Bromine (Br) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide (pdb code 6mn8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide, PDB code: 6mn8:

Chlorine binding site 1 out of 1 in 6mn8

Go back to Chlorine Binding Sites List in 6mn8
Chlorine binding site 1 out of 1 in the Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl603

b:39.5
occ:1.00
CL1 A:HFG603 0.0 39.5 1.0
C6 A:HFG603 1.7 31.6 1.0
C5 A:HFG603 2.7 29.1 1.0
C7 A:HFG603 2.7 43.8 1.0
BR1 A:HFG603 3.3 70.7 1.0
CG A:PRO158 3.6 20.9 1.0
CB A:PHE135 4.0 93.1 1.0
C10 A:HFG603 4.0 32.7 1.0
CD1 A:LEU125 4.0 29.5 1.0
C8 A:HFG603 4.0 31.0 1.0
CG A:LEU125 4.3 39.5 1.0
CD2 A:LEU125 4.3 30.8 1.0
O A:HOH860 4.4 39.5 1.0
CG A:PHE135 4.4 85.4 1.0
CD2 A:PHE135 4.5 76.9 1.0
C9 A:HFG603 4.5 28.8 1.0
CG2 A:VAL139 4.6 45.4 1.0
CB A:PRO158 4.6 23.0 1.0
CD A:PRO158 4.8 26.0 1.0
O A:PHE135 5.0 90.7 1.0
C A:PHE135 5.0 0.0 1.0

Reference:

D.M.Dranow, D.G.Conrady, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide To Be Published.
Page generated: Sat Dec 12 13:21:47 2020

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